Protein Info for mRNA_5368 in Rhodosporidium toruloides IFO0880

Name: 13736
Annotation: K09553 STIP1 stress-induced-phosphoprotein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 PF13432: TPR_16" amino acids 16 to 72 (57 residues), 29.2 bits, see alignment E=8.1e-10 amino acids 150 to 209 (60 residues), 20 bits, see alignment E=6.4e-07 PF14559: TPR_19" amino acids 22 to 75 (54 residues), 30.7 bits, see alignment 2.7e-10 PF13374: TPR_10" amino acids 44 to 75 (32 residues), 23.9 bits, see alignment 2e-08 PF13181: TPR_8" amino acids 45 to 71 (27 residues), 22.2 bits, see alignment (E = 8.1e-08) amino acids 84 to 111 (28 residues), 19.4 bits, see alignment (E = 6.6e-07) PF13424: TPR_12" amino acids 45 to 111 (67 residues), 45.1 bits, see alignment E=7.3e-15 PF07719: TPR_2" amino acids 45 to 71 (27 residues), 25.8 bits, see alignment (E = 5.5e-09) PF00515: TPR_1" amino acids 46 to 71 (26 residues), 32.5 bits, see alignment (E = 3.8e-11) amino acids 178 to 211 (34 residues), 29.8 bits, see alignment 2.6e-10 PF13176: TPR_7" amino acids 46 to 74 (29 residues), 26.5 bits, see alignment (E = 3e-09) amino acids 86 to 118 (33 residues), 15.8 bits, see alignment 7.8e-06 PF13174: TPR_6" amino acids 49 to 72 (24 residues), 12.9 bits, see alignment (E = 0.0001) PF17830: STI1" amino acids 271 to 325 (55 residues), 61.2 bits, see alignment E=5.2e-20

Best Hits

KEGG orthology group: K09553, stress-induced-phosphoprotein 1 (inferred from 50% identity to pic:PICST_63418)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>mRNA_5368 K09553 STIP1 stress-induced-phosphoprotein 1 (Rhodosporidium toruloides IFO0880)
MSTDESKSRADALKVKGNEHYKARRFDEARAAYEQAWETHKDITYLNNLAAVYFEQGEYD
KAIETCEKAVEEGREVRADFKLIAKALGRIGTSYMRKDDYDSAIKYLQKSLLEHRTPDIL
SKLKEAERTKSERDRLAYIDPAKADAAREEGNVAFKAGDYVTSVTHYSESIKRNPEDARG
YTNRAAAYTKLMALPEALKDAEKAIEVDPKFVKGYIRKSNVLYAMKDFDKAYAAIEEAME
KDESNAHTKEISQQFSKVTSALSSSRAGETDEQTYARAMRDPEVQQIMSDPVFQSILQQA
QQDPKSLQQHMVQNEGVRKKVEVLVRAGIIKTGPR