Protein Info for mRNA_5371 in Rhodosporidium toruloides IFO0880

Name: 13739
Annotation: K03859 PIGC, GPI2 phosphatidylinositol glycan, class C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 98 to 117 (20 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details PF06432: GPI2" amino acids 56 to 355 (300 residues), 239.8 bits, see alignment E=2.1e-75

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>mRNA_5371 K03859 PIGC, GPI2 phosphatidylinositol glycan, class C (Rhodosporidium toruloides IFO0880)
MRDGKLMDGWTQDAVKVYERANGAQTCVSSSSSSLDFANSHRSAEDDPPTPPLPPYRKVL
YLKQPYPDNYVDATFLADLKRNVNVHPASLPALLRQTLPITQHLACTFLFVAVFVRLSRG
TLSSSTLLSTCAGLSVVLRVWSWLIGESSTLLGGAAGRGGTAVAPIIPLVALYLLSPALK
TLTRATTSDSIWALSGTLFAVNLLLGDYRAIPTTSSLRFDSFRALFSRSALSPPAPHAHL
ARRAPLPSTLSLTAALSGSTVLASRLSSNLQVFSLLLFSTLWFGPFPLLRSSLTLRPTLL
LTWLLSTAALVALRSLGTGPTVMASLMLTGTSVVAPLVRGWLMIRYKDRLSGPWDAAVPK
VGGGGHDGVAHLAHLLPGRPPS