Protein Info for mRNA_5400 in Rhodosporidium toruloides IFO0880

Name: 13768
Annotation: K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 56 to 75 (20 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details amino acids 383 to 401 (19 residues), see Phobius details amino acids 407 to 432 (26 residues), see Phobius details amino acids 445 to 469 (25 residues), see Phobius details amino acids 516 to 536 (21 residues), see Phobius details PF07690: MFS_1" amino acids 62 to 458 (397 residues), 119.2 bits, see alignment E=3.1e-38 PF06609: TRI12" amino acids 75 to 326 (252 residues), 72.7 bits, see alignment E=3.4e-24 PF00083: Sugar_tr" amino acids 88 to 227 (140 residues), 39.5 bits, see alignment E=5.4e-14

Best Hits

KEGG orthology group: None (inferred from 41% identity to scm:SCHCODRAFT_233429)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>mRNA_5400 K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein (Rhodosporidium toruloides IFO0880)
MQAIDELRRSAEGQASEGGAVDPTPDSAELERDEKGEVGERAEDGVEEGRKGMRFWLIYL
ALLLATFEAAVEQTALSTALPTIADDLHSTSPSWVANSFMIASAAAIPWSGGLAYIFGRR
PVMLAGLGLFSLGSIVGGAAKNMTTMLAGRGIQGAGAGVIFAIVEIILSDLVPLSERGVY
QAGFSATWSFASATGPLIGGAFASFDYRWLFWINPIMSLPIALCCVWVMKLKGPEDNMRE
KLAKMDWIGNLVFIPSMSVLILGIVWGGVDHPWQSAHVIATIVCGAAGLVAWFFIEKHWV
KHPTVPFAAILNKTSLIGFVTTFLHGIVAMCVYYLWPAYFQSAKAASTIRSAVDFLPVVG
LVSPVAVVTGFSTNYLQAYKPQNIVGFVLLTVGVGLLALTTEATSTAGWVLIPMVVALGI
GVVYASTVFPVLAPLPPDLAGQALAFQMLVRTFGMVLGTSIGLTVITNGLGKHLPQAYLD
MVPDGVAGAYSSIPLIRTLEEPLKTEVRHTFAQALRIVWLVMIPFAGLALILSFFMDALP
LNTAKDENFGVKQKKDGSPDDFEKADAQPAAAASEDAQLYPTVSIAEATVRMA