Protein Info for mRNA_5421 in Rhodosporidium toruloides IFO0880

Name: 13789
Annotation: Interpro Domain of unknown function (DUF5102) 0

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 PF17104: DUF5102" amino acids 172 to 469 (298 residues), 173 bits, see alignment E=7.7e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (497 amino acids)

>mRNA_5421 Interpro Domain of unknown function (DUF5102) 0 (Rhodosporidium toruloides IFO0880)
MDNPWGDPSPPLASHSSISPPEPPRLSLEAEEEETGPAWDAELPKVEAAKREDDVEGGFD
GDQAGGDNEREEAQGPMKDVGEEKESDTEAENDEAAHEPARPSTPPPAQSASPEHASPAA
PGPSVPSTTLPATLSIPDTTDGPPMDDFDAPPMDDFPADDDDGFGTAAQEGGDDFDDFGE
VGETEGDDDFGDFGDFGDAAPLDESAFDTPAPAPSQPAPSPALSRQPVLATFPPLRLDLS
DTSRRAIAPQLQEFFRDAWPLAAQTVSDEPERQVEGVAQVLVTESSRNLLADLSQLPALK
PLDWRRSRVRREHLGSMGIAVPPEDTAELRVSTLGASSPYGASIVSPARPSSAPPGGTGS
LPFSSPNPNSRSSTPYGTSRPSASRSNLIAPAPTMNRSRADELMGIKEDDLTLMSLAKLR
EMNDELDRISVEASGVLTHALMMREKEGQDKEVYNGMIQDLVIAAAKMKTSSSLSSSAGQ
APKRSGSGRWKLSSSVK