Protein Info for mRNA_5438 in Rhodosporidium toruloides IFO0880

Name: 13806
Annotation: K06867 K06867 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1069 transmembrane" amino acids 420 to 438 (19 residues), see Phobius details amino acids 490 to 509 (20 residues), see Phobius details PF12796: Ank_2" amino acids 205 to 265 (61 residues), 36.9 bits, see alignment 1.3e-12 PF13637: Ank_4" amino acids 207 to 259 (53 residues), 37.3 bits, see alignment 9.5e-13 PF13857: Ank_5" amino acids 225 to 278 (54 residues), 29.9 bits, see alignment 1.7e-10 PF00023: Ank" amino acids 239 to 265 (27 residues), 19.5 bits, see alignment (E = 3.2e-07) PF13606: Ank_3" amino acids 239 to 264 (26 residues), 20.7 bits, see alignment (E = 1.2e-07) PF01843: DIL" amino acids 663 to 767 (105 residues), 104 bits, see alignment E=1.5e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1069 amino acids)

>mRNA_5438 K06867 K06867 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MAASKLDLPDSPPLPPLPSTNSSPSLSRSPTIKASTAQQSGTITRSKPLPSLAALAGVES
AVAGPSSEGVLADGVNGEGASAASDALLDASLIPNPPLPSHLAPFLSPSSPLSPTDKRQL
FTSVFLRSASAGNADTLEWLLSLPVDPSLSTAENAAAQRRFSLTAATLNNVEMLGDAFSE
GRAPDLELSDEAPRKWVDLEAQDEEENPALVLCVAFGHAECVRVLVEGGVRVNQVDRAGW
TPLHWAVQNNDIPIASYLLNHRASPLLASRKGLTARDLVKPGSEGFAMREVLTSAWEAAL
ERGRAARRAEEGVEGKGKGKEADEGAEMARSESRMSLAASEALSLSWEDREREKAEEQER
EKEGRRRMQLAMESAQNLELDMAMLGLEDGRRIENDVDSDSEEGTAPPFDWQRCQLDQML
VFSLADLPTILDVVITTIKPVRTRKYRVIPANVLFLCARFAHHHSNAELFDELLFGALER
IEAAVHDRPHNMSVCAFWLSNCLLFLYYLRKEPSIAAASSEYQTHFADLINEIFVFIIRD
AERRIDRVLEPALLEHEALPGFEDVAFEDEWASTRFVKKLTGRTKKGGIRNSTSARSIFS
DAGSVSSVGGSSIGDPSSPPRNRLVSASQVAPSEAAPNDITALLSATLFVLQAYEIPPSI
IVQAFSQLFYWIACEVFNRLLTQRKYLCRSRAMQIRLNASTLEDWARANRLPTKMVAVHF
LPLNQLLQWLQCLSSESSIDGLISTVQSLRALNPLQLRKAVRDYRYEVDERKMDEDCVEY
LVQIQKQWERDRAQKEAAAAAAQEEASNAADGPAPDAEEATPSTPADVGRMIDDAFRDPD
SFGSYTPPGGTETLSELLNSRYMLPFAVPTSANMLIHFDQPEAFGPFAGSQPSLSRPRSL
SGATTPRSRLSLSSASRMSSSASIVNGLSTPQTETSSLSSSARRREPFAPTLPDDFFAVL
DAAKAKTGRGQLVPSASAALLASVKGFATPDLTEGDGKEWWGGANGARHDDADEEDDATD
EAEQSFESDGSVVEYGGVARSRGGSVDPESSFESTGAEETPRMPSGFQQ