Protein Info for mRNA_5459 in Rhodosporidium toruloides IFO0880

Name: 13827
Annotation: K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1283 PF00400: WD40" amino acids 134 to 169 (36 residues), 29.3 bits, see alignment (E = 1.7e-10) amino acids 228 to 261 (34 residues), 15.8 bits, see alignment (E = 3.2e-06) PF12341: Mcl1_mid" amino acids 453 to 756 (304 residues), 298.8 bits, see alignment E=6.9e-93

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1283 amino acids)

>mRNA_5459 K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4 (Rhodosporidium toruloides IFO0880)
MGEDANKLVVTAHADGPAHLTFAPDGRYLYTSGYEGFIRIFDARLDADANAEPAIVDFHE
EAVTSISATTEYLCSASESGQVVLHQAGKTDLDGFLTRFSLPARSVRFDPRGRRAVVTSD
EVIAKVVDVKEPTKVQILTGHARSIREASWSPDGQLVTTSSTDGQIRVWQLDGGTEPTCI
QVLDGLIKAEDADSEYSCEVVWHPAGKFFVVPSKDSGEITIVSRETWQKTGTFSSRDGHT
GRISAVAFSTNGLYLASASDDLKDILVWSVKDRTIVFRTPHTHGMITCLAFHPAPTANSL
AYIDNKGQLTRWEGAVPSGLPLPTYSKPPASTTSTATAGKSATVNGGGRKRSDSASTSTS
SHAGGARGGKGLFRKEASEDEFDDLDDGALDGWIDDDLGDGALDGLDPRGMSVDPFADDV
PIPPKRGEGRSRSLAPLLGGEPSRTKLVEKGQPPFQPGATKWREDRRYLAFNMIGYIYAV
DRHDDGQAVTIEFHDRSAHIASKFDDKMKYNLAALGELGAIFSCPSAGDSPSQLFYKPYE
SWTALQTWSASLPAGEQATALAIGGMGPATDGSAAFDDPTVGLTGSGTILVATSRGFVRF
FSGAGLQKYIWNVGEEVVAMAAGKDWAAVVYRAGAGAGLDYSLIDTDTYEVVQQGKVPLS
KGATLAWLGFTSDNIPVMYDSKGLISVLDRSRRPRQGRWLPALDTNALPRKEGKQESYWL
VGVTDQQAHVIILKGGEKEPHFPTPLLQEFDLQFPLLNLDVPQGQLAEKYLRESLFVQHR
KDGAPAEDYSLKTELARQEVQTDKHLLQIIQTFCKADKLEAALDAVLLLSQPASLIAAAK
IAAFFDLPSLGERIELLQQMREDAGDPDEANAKRQSKWAHLADDRFITSAPVGGAARSFG
TPGAAAAHLFGPGGGHANNDHSFSPRPSGSSAFGSARRAFGTPASVGPSSSSKKRKSLQG
PSALAGSDGAMQEDDDDALEYADEMVEEDEPASSPKRMRVDSEEIQIEETQESAPAPKKA
VNPFAKRASNAKPSASHAANPFADKKAGKAKDLGRTDSFFHRVEGKEAPKAKGKGRAAAS
STTATASAKSKPTTTGGKQMTLFGLPPGKEPEKKTKKRKSTADEAEEDAAATADSTASSS
KKKLGAFRKKPGTAATAGLGAEAARELPREDEEMEETQIVDETQQDEESLPAPPAKRRDS
ELEAVREEQEEEAEDTQMSETQVETQVEEDPESLKENTRPPSSAAPDAASKLAQFAYKKP
DVVPEVATPPAEAVQAAEESATA