Protein Info for mRNA_5461 in Rhodosporidium toruloides IFO0880

Name: 13829
Annotation: KOG1721 FOG Zn-finger

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 868 PF12874: zf-met" amino acids 372 to 396 (25 residues), 15.2 bits, see alignment (E = 5.8e-06) amino acids 780 to 804 (25 residues), 15.1 bits, see alignment (E = 6.2e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (868 amino acids)

>mRNA_5461 KOG1721 FOG Zn-finger (Rhodosporidium toruloides IFO0880)
MGEWRTAGALAGDGPHGAADEPDGAPPGRGGNPIVEVRRDEGEFAQQASTRRGGSFSEVV
RAKEAAVSLANTRTTQQAGGDVVIEVNLAEFISLASSLRIHSLSALSHRLGRTLQTFRRL
LDPLSRPFTTATSHASSLCGLFLPSSDAMPNNWWYDDDYDVWVCDECNGREFVNWSALVK
HLQMSRNHNFCTDCERDFVSWSALRSHWANSASHSFCTLCDTHFDNYELLHDHDIYDHFP
CQGCDQIFASELGRYEHGRQSHLFCIEHRRAFLSQANLRAHLASSAHVQARIPCAAGCGR
NFIDYSAMVLHLEAGSYPSGWTRQKIDYKLRSLPAARPYMTSSQRLIAGPTTQTRSSWVA
TEDSYNDWEQAYECFFCHRLFNSLAGLNQHLTSPRHAYATETGRDGEKLYKCPMENCRHK
FSTFSGLVQHAERGGCAVLYKLPAACEVVVEPDLRDFTSLALTSRSSSPERLRLPATRCY
LLQDSLPQPAILFRCCRRSLQLSVLHRVQVDWQVSRSLLDDFVSLCLPDQPGQTSQIKPF
SSFHDLRGFLSPNPIERFTMSWWFNDHWQVWICDPCNGWEFEEWDSLVDHLECNHHYCMQ
CRRGFVSAPALRSHYANNSFHAFCTLCNTHFASNAILHNHKMDDHFPCEGCNQIFATELG
RYEHGRQAHPFCQEHRRAFLSEANLNAHLASGAHVQAQCVCPAGCGRRFVDRSATVLHLE
AGTCSSGMTRQRIDYFVRSLDTSRLITTSGPLLITGPSEPLQPTAWVATEDSYNYHAQAY
ECFFCHKLFQSLPALNQHLTSPRHAYATETGRDGEKLYKCPNPSCARHFVTLSGLVQHAE
HGGCGVLQFRMAQSTLDGFMGQMRTLTY