Protein Info for mRNA_5469 in Rhodosporidium toruloides IFO0880

Name: 13837
Annotation: HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 33 to 51 (19 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details PF01036: Bac_rhodopsin" amino acids 34 to 262 (229 residues), 158 bits, see alignment E=1.5e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>mRNA_5469 HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321 (Rhodosporidium toruloides IFO0880)
MDAAFELVKRNNVLNVNPRVAEIDITTHASDFLWAWFCVLSLSAIGILAWGHMSRPIGER
AFHELAAALCFTASIAYFAMASDLGATAVPVEFIRGGSLGENWVKLGVNDPTRSIWYARY
IDWTITTPMLLLELALCTGLPLSQIFGLIFFDLVMIETGLVGALVPSRYKWGFYAFGCAA
LFYIWWILLVPGRKSAMNLGSDFHKSYITSTAVLSVLWLVYPIIWGLAEGGNLITPTSEM
IAYGVLDLLAKPVFSIVHLMGLSKLDYARLGMSSSKVSDGAHQTLLNEKMGPNSAGATPR
PSTTVGSPTATTHGDGAGFHQHNAAAAV