Protein Info for mRNA_5473 in Rhodosporidium toruloides IFO0880

Name: 13841
Annotation: KOG2226 Proteins containing regions of low-complexity

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 transmembrane" amino acids 74 to 91 (18 residues), see Phobius details amino acids 271 to 287 (17 residues), see Phobius details amino acids 430 to 452 (23 residues), see Phobius details amino acids 615 to 633 (19 residues), see Phobius details amino acids 897 to 916 (20 residues), see Phobius details amino acids 928 to 949 (22 residues), see Phobius details PF12722: Hid1" amino acids 28 to 329 (302 residues), 130.1 bits, see alignment E=8.9e-42 amino acids 382 to 551 (170 residues), 63.3 bits, see alignment E=1.5e-21 amino acids 613 to 951 (339 residues), 106.2 bits, see alignment E=1.6e-34 PF09742: Dymeclin" amino acids 35 to 884 (850 residues), 125.8 bits, see alignment E=1.9e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1032 amino acids)

>mRNA_5473 KOG2226 Proteins containing regions of low-complexity (Rhodosporidium toruloides IFO0880)
MLGWSTQLGNKLFGPDPKLEFAKPGQGLDLLAGRTIPLDSPYWRQYLTLFDSPSDVVLLL
PSTSLLSALHSNPLNVLTLLYSLTTSLFSLLSNPSFPNVDLAKEALNAVRVLSRVVPIVL
APRVAGAVDEVEEELFWRREEVPVKKEVGEESASGKEKTKASEAEGQFVLEDEDDEDATP
ADPLTSASASTAPPAAEDPAYEELPPLAERLLGALVDLLFVPGFTLPESSRAGTDSSIVT
YSIWEPGIASPAPSHPRPPLPLSTLSARLEILRLLTLLISLPSLLTSPSHFPSLPNTWRE
ALVSGRAAGRGDKNVVLCLLCSVLNTALNAGAAGATGGEAGSAGAGLEGLRERAARLAAE
TAKRTTAPVATGSADGSDESSVKNALVGACLQFLDAVLIDHAPIDGPESAPNQFAFYLSK
LHRPSDFSFLQSGLVGLITTSLAAPATSSLFPLGLPLPVNIPSSSPGSPARTKKPAGWTT
EALTIFWRTLDTNRKFVSWLVKPDSSSEGKSRLLETLVAVEACMLDWHTDETQIGLVRLA
SFVMQTLSAEVASAGLAGKDAEEEVKRLLNAPLEPEVVGARLAGVVRRQVASQGIDVGEE
RQGDRDGKRETRSVTLVEYLLIVLHALLIPSSTTTAAPQPTRSSLSTLYPSLLLTVSNLS
PFFRDVGAAAATRLVRVWLAFSAPSWVLMEEGNPRLIFYLLETFNNVVHFNLDSNPHVMY
ALTVTYQRFDLLANFTLAQGIAEARRLRAARRERQQRAASSGPTLRPINEGVAASARRSE
DSPGASSEKALGKRRERPISLGSLADLSLSSPSSPNLSRTTSNTSGGPLSPTASEAGETG
DGQRPFVGKNGFVPTTEWVAAWREGLPLDTLMIVLSELRPKLLELDPSFPTSTPSASVIA
SLRTLLVSPSLITLLPPLSSQPSPRVRSFVSSAASMTWLASVIYGRIYLSQLDYLRDTLA
VQLFAIAQAPNSAAGGLWRRAGAVGGVQGVVGGLSAGLGAELDRVSRSAVEVGGKVGDTV
RGVLGRFGGNSR