Protein Info for mRNA_5477 in Rhodosporidium toruloides IFO0880

Name: 13845
Annotation: K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1210 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF17122: zf-C3H2C3" amino acids 1098 to 1124 (27 residues), 30 bits, see alignment (E = 4.4e-11) PF12451: VPS11_C" amino acids 1157 to 1200 (44 residues), 51.2 bits, see alignment (E = 1.1e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1210 amino acids)

>mRNA_5477 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 (Rhodosporidium toruloides IFO0880)
MSRRTTPAQKGSAGTTGAAQAGVAAMAAPAWRQFSFFGSTPFPSSSSSSTTPELVQHPSL
ISCVHSNPLLSDGVVLLADLEGSVHWVDEDWTAERSWRAYDGGRVQLMETCEWDPARGWA
ILVTVGDDSSTPFPLLKVWLLTLPSPSLSTDASSSDPPTPHLTLLRQTAISPNASRPSPV
SSLAVSPSLSHIVVGLADGSVVGWKRVDELIDSSLYDLEEAAARAAEPASSPSKGRTGAK
ASPFVVSGIGKLRTFSEGNKEPVTNVGITAASLSSPIQTLFILTTSQILALPLPTSSKHK
VTTTPTVLDDHGAAVGCAKVMRLGVGKGVGQEEGETAERMVVAREEAIYVYGSEGREGCW
AYEGPKSSICALHASSSSYVSSASTSLLPTPYLAIVSPPLTSSLASTSATIRQHARTTAS
SRPTPASGASVDERVAKVTIFDPENKFVAFSGTFGDADADAELSGVRDVVEAWGAIWVLT
EAGKLFRLAEQPLQDSMSTLFQRNLYTLAISLAKSRGMSESEVAEIYRRYGDHLYSKSDY
EGAMSCYLKTVGTVQASYVIRKFLDAQRLTHLTSYLQELHSRGLANSDITTLLLNCYTKL
ADDDALSRFIHSSSSSHATNGTNGDAVPDEPPFDLETAIRVLRQASYFSHASWLAERYRA
HGEYLRIAIEDTNDFVGALRYVRELARGQVGGKEGREEAEESMRRWGGVLLANEPDLTTE
VLVEICCGEEQKENGLAVKEGKGGEKETSRDLVKRDRVSTLRSETDKRATKGGTASPGYD
IPDSASLANLSISSDIVTAEPDSTLPSARQFFAHFADHPRHFISFLEQIAAGRYGKSVDS
LVPPAHLTGTDFPLPEPRELAPPPDYLDAAARDEVVVWNTLLELYVTPLPLRCSSDDDRE
GEVEQAQLRSKAIKLLRCRDQVPYDETQALLVCTTKGFEDGFVLLYELLGMYEDIVRYWI
DASLASSSNTSLSTRVVRSLRRYGPSCHSLYRLVLRHLTTSSELLSRHQADVLDILDEID
REKVMPPIAVVQILSSNGTASIGLVREYLKRQLLAEKQEIESDQALIASYRTESAKKRKE
IQELSDPNVPRVFQVTRCSACGGQLDLPATHFMCRHSYHQRCMQSLHRTEDGKLTLLVSR
SCLGENETQCPNCARTHGVIREIRKNNEQLAGRHDLFVQEVADSEDPFATVANAFARGWM
GTTSGGTATA