Protein Info for mRNA_5481 in Rhodosporidium toruloides IFO0880

Name: 13849
Annotation: KOG2710 Rho GTPase-activating protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 124 to 141 (18 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details PF00620: RhoGAP" amino acids 51 to 204 (154 residues), 106.3 bits, see alignment E=6.7e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (269 amino acids)

>mRNA_5481 KOG2710 Rho GTPase-activating protein (Rhodosporidium toruloides IFO0880)
MWERGEEVGHGHGGGKGRPVKLFGTPLKYLTKHEGVDSFHGANPHGTVRIPEFVDHCITA
LRMMDMTTEGILRKSGKFRVVNEIIDALDSSGGNDTVIDLAALDPITLADLFKRFLLALP
DPVLTGHLFNLFIACSHIKNVGIRRRAMHLVICLMPRTNRDVMEVIFLFLHWLSTFAHIT
VKDGNKMELTSIAKIMAPTLLRPLHRPPHPHEVPSMISSVLLLLEDQHLLHSVPVELAQV
LHIEVPKEHLGKKGAAERGGLVAWLERVL