Protein Info for mRNA_5503 in Rhodosporidium toruloides IFO0880

Name: 13871
Annotation: HMMPfam-Chitin synthase III catalytic subunit-PF12271

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 107 to 130 (24 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 169 to 195 (27 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 246 to 271 (26 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details amino acids 317 to 335 (19 residues), see Phobius details PF12271: Chs7" amino acids 40 to 345 (306 residues), 221.9 bits, see alignment E=6.1e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>mRNA_5503 HMMPfam-Chitin synthase III catalytic subunit-PF12271 (Rhodosporidium toruloides IFO0880)
MYSRSLAGICELAHRTAALCPQLLIETLTTYARSPSHSPSMPICNLFFRQLLVHPHGMQA
PASELLGLPPASDPNFQSALRSAGVGIGASCFIPRAGFVGGESGYLGNIANLILCGIAVL
VGLALAAAAIRRTAAVGRVEMTILFLMYAVVQGLQLADNSALLKQGSLALTWVTAVHVGM
LVALFWVLVWVAFLSLQVVEDGTLLSLIPLFGIGIILAVGSGYIALDTGLTITNYFQSKN
PAQIHSAWLFSLTIVWPAAAAAIYFIIQAGVVARVLREKKPLFTLLAAAFVFALGQAGYY
ALSHRICTGTHAKIDGSWIATLLETVTIGLIYASWTYITEDEWDDYTIGGANSATY