Protein Info for mRNA_5543 in Rhodosporidium toruloides IFO0880

Name: 13911
Annotation: K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF13489: Methyltransf_23" amino acids 76 to 247 (172 residues), 37.5 bits, see alignment E=6.6e-13 PF06325: PrmA" amino acids 76 to 124 (49 residues), 22 bits, see alignment 3.1e-08 PF13847: Methyltransf_31" amino acids 86 to 228 (143 residues), 41 bits, see alignment E=5.2e-14 PF13649: Methyltransf_25" amino acids 90 to 201 (112 residues), 30.5 bits, see alignment E=1.5e-10 PF08241: Methyltransf_11" amino acids 90 to 205 (116 residues), 21.2 bits, see alignment E=1.1e-07 PF06859: Bin3" amino acids 166 to 267 (102 residues), 108.9 bits, see alignment E=6.2e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>mRNA_5543 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme (Rhodosporidium toruloides IFO0880)
MSGTAGKEGLGEAAGSSTPPTLLPPTAPEETANARNKANHRTVWPYGNYRSYYSFRPAAS
SNTESAPPADSLDGRLAFLDRQLFAGKRLLDIGTNSGKIAFDALRHMGAASVVGVDIDPL
LIEDAWRIAGELGFAKGDDRLNFFAANVMDEGWLEEFVASGTRRVDVITLFSITKWLHLH
HGDAGMLRLFRSLHQVLPAGGVVIIEPQEWDNYKRAVKRNKDLRETFKAIKLRPPFEDEM
REAGFELEQRIEREEGGFSRPLLVWQKVA