Protein Info for mRNA_5550 in Rhodosporidium toruloides IFO0880

Name: 13918
Annotation: K09424 REB1 Myb-like DNA-binding protein REB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 741 PF00249: Myb_DNA-binding" amino acids 458 to 499 (42 residues), 49.3 bits, see alignment 4.7e-17 amino acids 524 to 569 (46 residues), 52.6 bits, see alignment 4.2e-18 PF13921: Myb_DNA-bind_6" amino acids 459 to 500 (42 residues), 38.9 bits, see alignment 8.7e-14 amino acids 526 to 575 (50 residues), 41.8 bits, see alignment 1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (741 amino acids)

>mRNA_5550 K09424 REB1 Myb-like DNA-binding protein REB1 (Rhodosporidium toruloides IFO0880)
MGKRHRSDAATDAATAVEPADEGARKAAKKQRKEEKKRKRLDKDAAAAEAGTAGTAEADQ
AGLNGAQGEQDAGDENTSDDRAARKAAKAARKEAKKAAKAAGNNAPPEQPAGSGIDSEQV
EKKKRKKDRKGKGKEVEATPEQDETATVSPVKEKRKKSKKRQAAADAAIQAGIDPSLASL
LDDRDFPVYPGAFNGGVSNAGASTSAAAAAAEPEVAYPNFNGSFGYFSAVQPHHYSQTLQ
DIPVDPSLIEVRAPNHASTSASLPDPQDPIVSPTVEHEVRLEDGEKRKAKDDKGKKKKAD
APPKKRKRAAAGEEGTTRTKRKKTQGTLGAEGVEAAKGDFTEQLVTKWLRAADLKKLADE
HGATYKSGKFSKAEDDTLRAAIEAFRAEQDLTQDELATLFNTKGDPKAKPNGVVAPQNEI
WTRLARSLGNRPLSAVYTHVKLWYPVGGKDEAEKKGEKWTKEEDEALARAVKELGNSWVR
IGQELGRSRDSCKDRWTKQLQNGAVLKAGTGAGGAAPATVKKQGKWSEEEEEQLRKLYKK
HGAQWTVISAEMGGARTSTQCRTKWTDYLQRREEKKENEPAADKGDAANLWHWPKEGSAR
LVHAIAALDPKDKTDIDYKKVSDPEIAPQGAKNLRDRFRRLMESAEKSVREEKGMDEEDE
VAFAGSSTLPSRSRRLTDAALFRAGRHHGATLGRVSNADVAPRQAQASFEGGQSRRFAKT
DKVEASRLPKGQVEGAGFVER