Protein Info for mRNA_5564 in Rhodosporidium toruloides IFO0880

Name: 13932
Annotation: HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 786 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details PF05721: PhyH" amino acids 93 to 300 (208 residues), 43.4 bits, see alignment E=2.6e-15 amino acids 486 to 693 (208 residues), 60.1 bits, see alignment E=1.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (786 amino acids)

>mRNA_5564 HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197 (Rhodosporidium toruloides IFO0880)
MFADSRPSICSPAEPIIRLSLSFFLLFRSLAPLLRLIETVIASLKMPDATMLAGQRPFAP
LPTQPSFVTLSPEEKAAGKWSRANMQRAIEILHRDGLLAISGAVDLEHVKALRELMTATS
KEIKGTLKHLSQYNHGIDTNFLMSAPLTDPELRFEDVFSNEFVIAILENYLGPGLKLNLL
TANCALANTTKRQNVHKDAPWLHPNCPYLVNTNLALSDFTPENGSTEFWLGSHVCTTGHE
QVWLSRDAETPICDVAPDAVEARRKVRPGAQITVPMGTITLRDMRTWHAGMPNSTSEDRI
MTAVGYAASWYPEPESRMKAPLSARELLTERTDHQLEFIPDDEWLAISQDWDLASETSIK
LPDVVGHRKSSKVPAGEREWAPLNQVADGENASRGRRDSEPPLSPAKVKPLRFSSSSFPA
ELLAVLSLASLPLLCFPHSRKMPNVDMLTRPQSTLPIQPGLITLSPQEKAVGKWSRANMQ
RAMELMHRDGVLAVAGVVDVDHVKALREAMDPVARKLAASKTRLSQFNQGFATNFLMSPL
LTNKDLLFDDVYTNRFVHSLIEAYLGPDIKIHLLTANVAMPHTQDRQRVHKDLPWIHPLA
PFIVNLNLLLCDFNEHTGSTEFWCGSHNTTAWDQVFPSKDASAPICDVADDCLEARRLER
PGSQVDLPMGTVLLRDLRTWHAGMPNHSDEWRIMTAVEYAASWYPEPARKQKAPLSAKPI
LEKYTKTDLDFVPDGEWESFAQNWDFADPKAMKLPSVPGADEGTAEGGEWVTLNAIAEEE
KYVRKA