Protein Info for mRNA_5572 in Rhodosporidium toruloides IFO0880

Name: 13940
Annotation: K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 PF02213: GYF" amino acids 426 to 470 (45 residues), 64.2 bits, see alignment (E = 3.4e-22)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>mRNA_5572 K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein (Rhodosporidium toruloides IFO0880)
MSTTQFGGPGSAFSFAAPTRPSRRTNSSSSFKDAAVSSPTANGTSSHSSGPAPVDPPAAP
SLGSFSPSHERENALSPNGTSGGDAGSARSFSSILSPSLSATANGGALGEANGASGKGKP
FVYTREFLLSLYDEEKAKKRPLELAAHETATRELTGSSGGAHKPWLLQEYREGEKELFAT
SIHPANNRPSRMNRNDSSLSTGGANGSSSTLDLSTLGTLPRDRDRALGSPSIRSPSIEKE
GVLGSAGRERRTRDRSSGATMGIMGGVLGGIAANTPTRKREESGSSATKEGVWQGGRWRR
NAQEAEEAEKQRSSAFGSRRFPLADDESRRSSLSTGAAEPVAESWEDSTPPDDGEKRQQG
SSALNGTSLNEANEPDVTASVLGSLALDSDPVDDPLLRKPSDGTGTPSRVAPPPGLGSLP
PADVMWQYRDPSGQVQGPFSATMMHDWYRQQFFTPDLRVKRTTDADFESLENLVRRTGDS
EKPFLAPSPRAIGTASAFSSAPGTPRPGSAWGSTPVGRAQTPLEQLTSAVSQGRFGGGAA
SASSPFYEPFGSASASPAPQVQTLQQSFSQSPAPQAAVDPWGAPLPSAPGPSWNGVAQQQ
QQQQPQTPNAHAPLQSPMDILRQLALQQHGLPGQQQPFGQHGHSLDAFGRPSPLPASPFF
DPSHLAAASPTAWIGQQLPQQQAQQVQHPWASLTGANAPTAAIGSPFAQFAQPPAATPSV
PEPIGTPSAQASAAQPSAAQLSPWGDVQQQQPQAPVVEVKETVIVAEPETAAAPAAVAVV
EEVKVEVPAPKQTKTEARKSKAAAKASSPVAAPQQVASPVVPEAESSPSPAPSASSKAAA
AAPWAKEDVVAAAPTNPSPSLREIQEAEAREAAKRKEAARIQAAQANIQAAQRAAALEAQ
AAAESLPPSASWAAGPAQVPAPKPTASSPAASASASAAAPWSKPAAAPVVAVAKGQKTLK
EIQEEEERQKKAKLAAQQQQQAVAGLVGRGYAGSVAQAAPASNSPWITVAAKPTVARPAA
PAAKPVVPGLPGSSTTATAARTPGSTGLPVKPAAPAPAAVRPAAPAASASVKIVAPRSTN
VATPSTAVYDMENPPPPSPEFLSWTKQALKGLNVPLEEFVQMLLSFPLEASADVLEIISD
SVYANSSTLDGRRFANDFTTRRKNDVAVRYPSIFAKGAVRTAAGKPSSMAAVLASAPAQP
QQEWNVKVSAKKKKGGK