Protein Info for mRNA_5582 in Rhodosporidium toruloides IFO0880

Name: 13950
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 72 to 94 (23 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 224 to 248 (25 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 320 to 344 (25 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details amino acids 387 to 406 (20 residues), see Phobius details amino acids 427 to 442 (16 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 11 to 417 (407 residues), 266.3 bits, see alignment E=2.4e-83 PF07690: MFS_1" amino acids 11 to 273 (263 residues), 74.9 bits, see alignment E=6.2e-25 PF00083: Sugar_tr" amino acids 12 to 421 (410 residues), 273.8 bits, see alignment E=2.9e-85

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (497 amino acids)

>mRNA_5582 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MPSFIATFGEFSSTVRGIVVASILLPSTLSGLVAGSVADRISRKHTIALGAAIFALGQAV
SCGSVRSLGMLIAARVVAGLGEGLFLGTVAVYVAEISPKEMRGRMMLVAQLAIASGVATG
FFVCYGSARIPSSLSWRLPFALSTFLALLVTFLAPLILPYSPRWLLLHNRRAEAERVLDL
LVGTGDDVQAERRELMSVPRVVKGGKRAAFVEMWRRDVWWRTTLGALLQGMQQLSGIDFV
LFFAATLFEQAGLSGTTSSLLAGGVTGVLIVLTTILTLLWVDRLGRRTIYIGGGCAISAT
LFVIGAMYASGKAGTEQGKWVVVVMIELFAIAFSGSWAVITRLYASEIQPSKTRAAAASF
STAINQAINFVVALTGPVFLSKSPSGPYFTYGALTAFASLFAFFFMPETKNLSLESIDAM
FSSHSPATSYLGSVPLAVPLYFTRSLHRTRRHSEHIPEEDDDETTRVENEVDKFRREVKE
RSNLAETGAEAEKAVAD