Protein Info for mRNA_5584 in Rhodosporidium toruloides IFO0880

Name: 13952
Annotation: K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 995 PF00270: DEAD" amino acids 129 to 296 (168 residues), 35.2 bits, see alignment E=2.2e-12 PF00271: Helicase_C" amino acids 485 to 573 (89 residues), 39.2 bits, see alignment E=1.6e-13 PF04408: HA2" amino acids 635 to 772 (138 residues), 95.3 bits, see alignment E=5.6e-31 PF07717: OB_NTP_bind" amino acids 839 to 932 (94 residues), 64.9 bits, see alignment E=1.4e-21

Best Hits

Predicted SEED Role

"RNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (995 amino acids)

>mRNA_5584 K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1 (Rhodosporidium toruloides IFO0880)
MAEESDEDEDEDEDEESEEEQDGVRRPPRIRGSFRAWADAQVLAAAGLDSTTSTAVADDE
GTYKPLLPAGSGVAPAPLPEGTTGPLGAPLPASDLPTLPPQRTIYVPVTRTPEIEAQRAE
LPVVKEEDRVMAAIRGNAVVVICGETGSGKTTQIGQFLWEAGFGDAKSDNPGMVAITQPR
RVAALSTSARVRTELNLPPTSSLVAHRIRYSSTTSPDTKLVFMTDGVLLRELAADFLLSK
YSVVVVDEAHERGVNTDVLIGVLSRVAKLREKRWKAGKEGAKPLRLVIMSATLRVADFAE
NPTLFAQPPPVLHITARQHPVTLHFARRTAHDYLEQAYKKVARIHARLPPGGVLVFCTGQ
NEIVSLVKRLEKKFGPKAVQARKERLKRAAMRGAGRDGRSAGDGDEDEAEREVEDLKLRG
GKVEKGDDLEAEEVDLGEGRDLAADVDDGVYDVDEDDDEALESDIDGDDDTFKGIDMEED
TDEPMHILPLYSLLPTEKQMKVFQPPPEGHRLVVVATNVAETAITIPNIKYVVDTGRAKE
RKYDHASGIQSFEVDWISKASAAQRAGRAGRTGPGHCYRLYSSAVFEQHFDQFAKPEILR
MPIEGIVLTMKSMNIDAVANFPFPTPPDRDALRRAEKTLVHLGALEPAEVDSKVGGKITP
LGRSMALFPLSPRFSKMIVAGQQHRCLPYVIAIVCALSVGDPFIREANLGDDEESADAVD
EAEKTLSRAEIAHIRDPEIKAKEERKLLRKAFFQVQQRYAALGKGTSDVFKLLSVVGAYE
YEGGRESFCEANFVRTKAMDEIHKLRAQISRIVSSTFPGIDAGFVPKLPPPNETQLKVLR
QLLTAAFIDQVAIRKDLADKSSNLSYAKVASTRGVPYRAFGIEEDLFIHPSSNLFHSPPP
EFIVFNELHRTHKVWLKTITKVNPAWLPVLGRPMCTFSKPIETPAQAIAAKAASSALSGD
TRQIFVVPRFGPGVGIELKPIQMTQKLVNGRWVLQ