Protein Info for mRNA_5618 in Rhodosporidium toruloides IFO0880

Name: 13986
Annotation: K09866 AQP4 aquaporin-4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details PF00230: MIP" amino acids 63 to 256 (194 residues), 154.2 bits, see alignment E=2.4e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (420 amino acids)

>mRNA_5618 K09866 AQP4 aquaporin-4 (Rhodosporidium toruloides IFO0880)
MSGLPTAGAPTELPSQEHRRHRGPLNWHTRPASRGPLRLAVKNTFVAMVGDVANIPTTSV
TGAKTAGQDGTAASAPNTSNLLYIALSFGFSLAVNAWIFFRVSGGLFNPAVSLGMAIAGA
LTPLRAIFLTISQILGGIVGAAIIQALLPGTLNVATKLSPGTSVARGLFLEMFLTALLML
AILLLAAEKHKATFLAPIGIGLALFVAELVGVYYTGGSLNPARSFGPAVVLRSFDGYHWI
YWVGPFLGTLLAAGFYKFIKYLEYETVLGPEEPDTPSPSSSNNQNVQNNDKATPGRNLVA
PSATLLGSTAAGASGSTRATPTTATTSMGEKEVHPADQKGMVAVQGPGLPDLLTTGHSGG
VFDLPQPSYDYRTRLERIESLLETLIAGAGAHGRKVSTEGTVVGVDETRHEWHKVNDSPV