Protein Info for mRNA_5619 in Rhodosporidium toruloides IFO0880

Name: 13987
Annotation: K09885 AQPF aquaporin rerated protein, other eukaryote

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 50 to 74 (25 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 260 to 280 (21 residues), see Phobius details PF00230: MIP" amino acids 50 to 277 (228 residues), 149.9 bits, see alignment E=5e-48

Best Hits

Predicted SEED Role

"Aquaporin Z"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>mRNA_5619 K09885 AQPF aquaporin rerated protein, other eukaryote (Rhodosporidium toruloides IFO0880)
MSSGTSQLPLHAGPNAQGNADRPRRRSRFKLFDVHPPAQGSPRYAATNHLIATIGEFVGT
FTFLFFALGGTNVANTLAASVTGTARTGQGGYPAAAANTSSLLYISCAFGLSLLVSVWIF
FKVSGGLFNPAVSLGMGIIGAITWLRVALLVAAQILGAICAAAVLNALIPGPLNAQTRLA
PGMSIARGLFLEMFLTALLCLAIFFLAAEKHRGTFMAPVGIGLALWITQMLGVYYTGASV
NPARSFGPDVAVASFPGYHYIYWIGPALGALLAAGFYKLIKFLEYESVMGPEHPDYATAQ
ATSTMVSESLGLAPAPHAGDVGQGASQVQGPGMGDYLTRQQTRGTAGEGEGTVYSPPGSP
TSPTKTVSTFQDRFDRLEAMVGQLIREHGGGEERMGGNGGGQRFA