Protein Info for mRNA_5630 in Rhodosporidium toruloides IFO0880

Name: 13998
Annotation: HMMPfam-SUR7/PalI family-PF06687

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 100 to 125 (26 residues), see Phobius details amino acids 134 to 160 (27 residues), see Phobius details amino acids 180 to 204 (25 residues), see Phobius details PF06687: SUR7" amino acids 13 to 192 (180 residues), 77.4 bits, see alignment E=6.4e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>mRNA_5630 HMMPfam-SUR7/PalI family-PF06687 (Rhodosporidium toruloides IFO0880)
MAGFGIRPATPGTIVVLAATILLVLVSVSVPLLKSIYFLKASISTSVGGTKISGTVTLGT
WGYCVDGTCTSAKLGYSLDVARLFGVNGKIAGISTSVLKWITYLLILHPIAAGFSAISVI
LGLLAHTHGFAGTAFTTCFASFAATFSLLAFIFDIVVFVIAKSRIQSSAVGGSAQLGNAI
WMTLAAMILLALSGFFFGCGACVIRRQRAGKEASEAYRPHPDADYGAKMRSEALVAAERD
AWRRKNEGQLPQFAEREAIPLNSLDYNQDDEDPPAARYEPRQFASSSDIAGQGAGAPSII
TGVGEGYGRRNPSSAPGQGQGVSFAPEPTSYTGYAAAGAAAVGAGSRLAAEARANRGYAS
EGGPPDDRRLNSVSSGTTEPFTGMYGHEQPVGQAVSADYSHEGAGAYGASRLVGPRAPSA
SPAYGGAYPPYPQSTSPPPMQGSSNTVPPLPAATAFGSTSTPYPPEKPSYPYQQPTSPTF
HQPQQQQFYVQNPSSTYEDPYVQPQGLQDTRSLAPTYHTHEASGAGGLQYQSTGGHDMYG
VPRY