Protein Info for mRNA_5631 in Rhodosporidium toruloides IFO0880

Name: 13999
Annotation: KOG4197 FOG PPR repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1388 PF17177: PPR_long" amino acids 932 to 1071 (140 residues), 31.8 bits, see alignment E=1.9e-11 PF13812: PPR_3" amino acids 942 to 1001 (60 residues), 30.8 bits, see alignment (E = 4.9e-11) amino acids 1018 to 1073 (56 residues), 15.9 bits, see alignment (E = 2.3e-06) PF13041: PPR_2" amino acids 955 to 1002 (48 residues), 35.4 bits, see alignment (E = 2e-12) TIGR00756: pentatricopeptide repeat domain" amino acids 957 to 989 (33 residues), 18.4 bits, see alignment (E = 8.7e-08) PF01535: PPR" amino acids 957 to 984 (28 residues), 13.9 bits, see alignment (E = 1.1e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1388 amino acids)

>mRNA_5631 KOG4197 FOG PPR repeat (Rhodosporidium toruloides IFO0880)
MKGSLRVRLTKAAYSSRVGRHILRNVSSTAVQGLLRSVSGCHTSNGPAVGLSAFSSSSIS
RRLPLPSRTSLASLSPSPRSLHTSALVAKPAYSPQPKPPSAQSSSNNPSERARTVKPQGS
RGKSYSESTRPPSRQTSRSASPRPARSQRSDTPEESVEAAAEPGALYRARRRERAIQGLD
ARQVQAYDEIDEAVKTGDILVLERAVQQYQADPSRWSTPAHEWAMLSLARLRRPLQPVDS
IIHLHAAFANSERLAPRRTPHEVVIEALCARDREHLRQIEWLEARGARRPHITAARGPWR
HAVRAIEDDVFNQNERDALAQLHQRNFFQQALFYYAELGVAAGDLSLRVHEALIEGAAAR
GELEGTLSLFGRLEEHRRHRPGWRSHVALIHLYAKQENSSELIKDIFESYLKGRANGDIK
APAREYFRRTWLSPKPIRHNSGTEPVFRSESLIYINNGDEEVWGETVRALADIGDMAGAV
AIVEKLTKALRSKQGGPVGYPKVIAPETWGTLAATFAVQGDHASAVAWFDRLVSGTAPAV
IDPRGRLSITALLTALRSNDVAFVNHVYRHMLAQAHKAPLASSQLARVIDFNLAHAAKAD
NPAERNELFDTVLEFRRAFRQAAKDDLEAGVGIANDRSTGFLGRMASTFGSFGRFEEATS
TFVALAKTVRRAMTPGETSAGPEPIAWGRSARKWAFALTDDASGTLGFVPLAKHDTKDKS
IHGLTRLVPERPSLRQAVTVVGLTNEIRNLGELAPVADHVLTVAEAYSAARSGPKREAQL
GQLSGADWRVVLECVAYTAAFLGRGIVVDFPFPGFDAILDDFLASGVHLPRSGSLDFDAF
MEALKIAGVSEARISQIAGVLQQKTAEEPVEEAKRPLSSPSSKTPKRKVGVVTTASLADD
AAAGQSDQGPATNRAAPSAETYEAKIAKVDVTDGDARSAVTLFEEGLRLGVHPTASLFNA
LLSKLAKARQAKQAFDYFELMKQYKVRPTPLTYGLVINMCCNVGDDSTATFLFNDMCASP
GFQPRAPPYNAMMQFYTRTKPDRERALFYWNRFQKDKVQPTAETYQCLLDAYGTIAPPLL
DETQRIFAELVEAEGIAVSSSHWASLIRAYGVLGKDLERAQAIFESIKDHATTLSNPNSR
LPDAVIYEAILNSCTANKGYDLADQYLVRMDEAGLPVATVLADSLLEGVIDNKQYDLVDR
YLDRMRSDGISLSSDVAEVLLRSCIASNRLDLVDHYLERMRSDNLRLPASLVETLLHACI
VGERSELVGHYLERMHQDGVSLPAHAAVSLIKTCTEQGAFERARQLFEAIQTPLAAAHDN
SSSQQVGKPAYRDPSTYEAMLRCELAANEPFKAIEVYNRAQERELPPNVVARLRGLLEAA
GIQLLSLD