Protein Info for mRNA_5634 in Rhodosporidium toruloides IFO0880

Name: 14002
Annotation: K00750 GYG1, GYG2 glycogenin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 859 PF01501: Glyco_transf_8" amino acids 12 to 231 (220 residues), 84.1 bits, see alignment E=6.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (859 amino acids)

>mRNA_5634 K00750 GYG1, GYG2 glycogenin (Rhodosporidium toruloides IFO0880)
MATPRAKDRAVVTLVTTDNYLPGALVALRSLLDAEGAAPSPASRSFATVALVTPATVGHG
TVTALQKAFDVVIGVEQILSESLEELKLLGRRDLAASLTKLHLFRLTQYKKVVFLDADTL
VLRPISPLLDLPHRFAAAPDVGWPDAFNSGVFVAEPSMETFDALLRMMRSRGSWDGGDQG
LLNDYFSDWHRLSFTYNVTPSAYYTYAPAYRRHGQDVAVLHFIGAEKPWHRGTRDAYDPE
AASKDYYGLTHKWFDVFERHFGSISTYDVASRVVAPPSFLSQELTSLPPLPAQAKPSLEH
QAPGSAPSTPPTPTISVAPPSPPRSHESSTTATPTATTPLAIPSARAASPPHLTWDPARS
SPPRNGPPQMRDAVPYASNIWDSTSRREMKKRFEPPARYPEPPKETHDWYKEVMSKKPDP
SQVKPVFPWEQAAAKQDRPVTTPGGTSTGFQFGSMPPPPPTRTFSDEGTASSAGPSAASG
SFAHSGPGTFVNAWDSVPAIKRYASSLAKRQTGHSRRISTEEGKGGPQSGGLKVGSSTAA
GGANTRRRSGSAASTSSITRNTDRRDRGPGPGAAGAVASGATAAAAATRSPRPSSVYSKD
EDASSRDGDDEEDEDADGSNATDERDDDDDEPEDSEEGIDRIQIKFRRAVDKGELSPTNR
RSKKSNSPSSTEEAADTGVFPPRSGQKTPTTASGVSAPTSPTRARKDSRYVPTSPRQPRS
PHYVVASPAAFANAAQTSPRQQLRLQMPVSPASGALSPRLAAQALRNSTAARLTASGSGT
GDAPPLLRATRVFSPDTDTGVVKQQGLAALQRFVENMEQQMASQGHAYQPQQQVTSSQEY
HPQQQQQFGGGGSGGAFRW