Protein Info for mRNA_5655 in Rhodosporidium toruloides IFO0880

Name: 14023
Annotation: K01115 PLD1_2 phospholipase D1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2078 PF00787: PX" amino acids 626 to 734 (109 residues), 38.1 bits, see alignment 2.1e-13 PF00614: PLDc" amino acids 1053 to 1079 (27 residues), 26.5 bits, see alignment (E = 8.1e-10) amino acids 1366 to 1388 (23 residues), 29.4 bits, see alignment (E = 9.9e-11) PF13091: PLDc_2" amino acids 1353 to 1407 (55 residues), 30 bits, see alignment (E = 6.7e-11)

Best Hits

Predicted SEED Role

"Phospholipase D (EC 3.1.4.4)" (EC 3.1.4.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.4.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2078 amino acids)

>mRNA_5655 K01115 PLD1_2 phospholipase D1/2 (Rhodosporidium toruloides IFO0880)
MDFADVVHKALEERQREGHTDGETGALSKGVGHDKGKQRPPALSLLSVPGSDRPTSVGAS
PVARGQDGPSSPGTPRTAASPTSPLQLPFLLANGRPNAGGSKRGSSSRSPSASRSPTRRQ
TTADEFLLPPFYGAQIPSSPTSSPPSNALGLDTPRPKHRTQATFNWFDDMREKEGRDGGE
TESFRRTDSPARLDMSRSSSLSTTANKTNDGPNGVPPRPSSGSRPRSSYRFPTTSSSPSS
SKTRRRQPRQNGYANSNLAQDAQSMSSDRDWSDVDSTPAPPGPSRPKSSPSASKDKPPPS
PSHPRRSSTDEKRQNSTDTTGAQSMGSDLTSGAQVSGGLRGAFTVSDLERGARILRGEEP
DRPAHETPAGAEKESTPKHTSALKRPQQALSPLFKGSTKLLSGGKLKRARSAGEAEGPSS
GVQTPSGEAGGRSRDVSERGSGSATPARPRSMHDAAGEDAEWEDETRDQFDTLAGARSHD
AQSGRPNQSRRSSLWTGGGFFAPHHRASGSGSGTSTPRGGESEDEGAASSGPGPKRPAGA
ARRGSAWNVVKNRFGVAGGDKGRKKKEKQGASLTGHELVSELATGVLPLVLVKMATMDRD
DKGDKRIPILMNYLKLKITDSVYPFHDRHAIFRIELEYGDGAVKWVIYRELKDFVNLHAH
YRVANLRQGIDKFPAFPKTSLPYLNWLKSEGRGQVGKAEFARMQREALENYLLKLIRATM
FGPGANRLCKFLEISAMSIKLATRGGEQGKQGYLRITSSGASRRKQPGFHPLSWKKRHEP
KWFIVRDSYIVAVENPASTEVFEVIMVDSTFEIERPTRMYRKGLNFLHANGTNDSLDDVD
PELREGNVDLLAQVGRPQGHRGAGDPNDPSTTDPKSNNEKEDLKSSSVHTFYLRSSERKL
RLVAKTERQQDQFVASIEKMLAKTIWAGKNRFESFAPIRLNVAAQWLIDGRDYFWSLSRA
ISLAKEKIYIHDWWLSPELYLRRPVANNEKWRLDKLLQRKAREGVQVFVIVYKEVSNDFT
PVDSQYTKLRLRGLHPNIHVQRSPSHTSTGTLLWSHHEKMCVIDETIGFMGGLDLCFGRW
DSPGHVLVDDGPNPIKDGRAVHGLDTETAARHQIWPGKDYSNQRVLDFHTLSKPFEDMYD
RSKVPRQPWHDIGLQIIGQPARDLCRHFIQRWNYLLRIKNHSVKMPFLLPAPDFTPEQLQ
NQRITGTCEVQICRSVGPWSMGISHIEHSIQNAYIKCIQLSDHFVYIENQFFISSTEVEG
TVIENKIGDALVSRIVRAHSEGTPWRAIIVTPLVPGYPYPLDHSEAGSVRLIMECQYRTI
CRGEHSIFARLRREGIDPDEYITFFGLRSWGTLSNGALTTESTYIHAKGMIVDDRIAIIG
SANINERSQRGDRDSELACIIRDTDMIDSTMAGKPYQVGRFAHTMRVRLMREHLGIDVDE
LEASEGREELEAHEAEHFTLKDEQWDPDHEQSVGDDRGAKAGKTSRFIRSAAGATGEYVS
GVSGGVAEAASLGLQKTAGKVTTDMKLKVDKKEDKPPQSVDDDEETNADRIVQGSSGTEG
FASTVVPTLEEKVMTEGRPSGSNKLDGNVRDLRQQAARERKEGPTLQSPAQQREAEQEQQ
DDAGGQRPPSGEPQPSDKHPQRSKLGEETTQHNTSVDDTRKLDMEDASSPEEPEPLSPMN
EDGPESEDKQDEREKEVKVHPPPPDLNADPPDIAKADQGYRSLEQDGKDGKSGSGSSESR
ENLHRTTSQSQGNEQAVNRNTITSSLRRNLRERGAYTIPLAAPKIDPYGFADPLVDSFYK
DVWLAAAVRNTQVYRKVFRCIPDDLVQTWKQYREFQNWAERHNKAPKNVVPPGDEAPHSD
PAGHSGQHGAGGGGSGGGAMGQGRDEPGPTMDKENRGSAMESIKSAGISGGGEKSRSRDK
LDEYGVSEEKGGIERSTEGKSTITRRARSSTVAASEDSSATAVEGGKKARGRSGTVLRSG
GGGGGGSNGEKKKDAASPSSPGGQANGGSSESGGGGEGNEGHEHEDAFPKEEREQMEALL
EEVTGQLVVFPTRFLEAESAGGNFLFSKDRIPPMAIYD