Protein Info for mRNA_5662 in Rhodosporidium toruloides IFO0880

Name: 14030
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 transmembrane" amino acids 64 to 87 (24 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 184 to 207 (24 residues), see Phobius details amino acids 269 to 290 (22 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details amino acids 409 to 433 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (547 amino acids)

>mRNA_5662 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSAPGSSGLGGWSSLIPPGAEWIEPNYEQILKSVAAGESPYLVIIDIVRNLYHPSVPAGF
TGQLYFLLGLFAIHTLILVLGLAIRLAQGRLWFFTRLDRTVVLPNTSTLYAFCAIVYAAL
GIVLIVASIDISRGGDLPRWYQGMRASWFGCLWVGAYFEIWSTLCGSYIRKKGAFYKESR
VKTVLAILIPLAVLLIAWVPPLVIFYFSVNAYNHSFIVAGEIVDMLEEWQKTWTPAKGLE
IDKLATLFAPGSELGHDFTRSSHLTRTGYAYVAGVLLATFAIYLVGVWLEVAHLSQTVSD
LRTQAKEAVYKRNRGARPSDLTDKTNERSNSSASTPSLSTRIARQLDEEQFAHDGRTEAT
QHPWTLLAWVRRNRLYSAGCIATMLLVNAGIDLWQATTHIDLRYPSGQFIVEILISCWMN
GILSTAVALLLLFRSLDASTSPFLTLLRRRLPFLPFPPAVTCSNATRSLITTEPPRYAAA
YATGSVPLVERTTTRSFNEAAESETPLPVMLSERGRKESEWDEHEQEKQGAWSAIAGSSA
PSSPRAV