Protein Info for mRNA_5667 in Rhodosporidium toruloides IFO0880

Name: 14035
Annotation: K11233 SSK1 osomolarity two-component system, response regulator SSK1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1715 PF00072: Response_reg" amino acids 1317 to 1389 (73 residues), 55.7 bits, see alignment (E = 2.7e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1715 amino acids)

>mRNA_5667 K11233 SSK1 osomolarity two-component system, response regulator SSK1 (Rhodosporidium toruloides IFO0880)
MSGADPSPITATSTNSQRSQRRKDSADSSGSSANSSNSDLAGRTGAGSADGAGGSTASRV
GRRKSRKSLGNSALGEQPQPGTFLTRFLDSFRPSSSSTSPVRPPLPRSLSSPTPFAQTTP
DGEPDVARRPSDSPLPGAFPPSPGQPYLSPSASPVGTMKRFAPSFRRSRSQAGSQKSAGS
SSASPASSPGLAGMPPQLSPGSPSTLRGKERDPMDSMFGYAVGEGPARRGSMTSQMMVQA
HDHAYASGRAPGTPLEPINEPSFGYPTGQSSTSPPRLEQSLDFIATLLPPALLLLSQLGP
THIFSPPLPLPSLFDATLPSAAYRKASISSATGSNALLSSAASISSTATGSTTSASASFF
NGLPTVEHLLPSYSHELHAATTLSMPAVSAAAVWRLFRGFEWAGEVGKGEQPLPPSPVPR
HLGGQGGGPPLEPEDDPEQVFDFPALIQGVADVLAADAAARGIELVVGQAGSGSAPSPIT
TPGVAGGPAATDAAQQMKSEASRKERKGSESRELLVRADERAWSVTLIWILHHILAGARS
GSTVDIRFLATAATPPSSPDNSRPPSPTGSYHPAASPPSARPQNWWTVSLEILLTTPPRP
ASPSFIDETAAMPANDPLPKPPFDTPFARSLFSLVGLSLAPSVQNEATSQAWALEALLPA
ARPKTQSIAEDPSTILGRRRASLDAIVGQEPSMNDLKRFADTALAGHKVALHAGENSAFA
RHLTAYLAGWGMDIQHVPLEGEGLSNGSGGGSPDSLWKGGAVGGGRPGVTSRFDSGFETA
STSPGSTSDGKAPAPPVVGEGNSSLVIIDDDVSTLRRMLISLRAPPLHMAPTLMAKRPQL
ATRRTRSSPHVRQLHQNQSPQPHSQQASQWVIVHFASLVHYKTIKEIVQDTLAMSKSPNL
PEVIVVPKPAGPRRILTAIWTALKRPPVDPFLPPIATSPTSPGIQYWTPRLSPSLASKEQ
QEFDFSVNQQQDASRKGSDSSGSGSATGQTLGKPRTPPAQFEATGVGRLPPSPLGRVPDT
ADSYFSAVTEELKDTTTSEGMIVQSPDGRSGIFFQPQPRGSRSSSTREKIRAGLDRSLTS
QEIPEHAVADATSRPPSDPPSRVSTAAPHEIGLGSASSSRRVSSGAPSHSNSGDIVIAPV
ASAPPGTPALTLDSFISAAKSRALGEDVSPEELPPNIMGEALSRQQSHASSNRSIPTPSR
RSLSGSSGSAGAPSAATSPRALGGSQSPLYSVSRRGSGSGAASPIVSPLPQVSSGAAAAG
EAAARAFAAARAMPPTPSSPAGPAKARTRSLTTASMPKNKRRTSRKSTIVGVPPISVLIV
EDNPINQTILIGFMRKKGISFKVAKDGEQAVEMWKKGNFHLVLMDIQLPVKDGIEATREI
RELERQNNVGAFVTTPTSVPSSPSSALGRDPLSTPGSPLLTMPVIIVALTASSLQADRVA
ALAAGCNDFLTKPVSLPWLESKLVEWGSMAYLSGFGRKSETPDSSVSSSARSGTPARPRS
PARIKAPPGFSAAELASRAEEVSQHLHIDRPISRSNSPSGLRGASGLASIAGSPSASPEP
SPPSGAQTMVPKSGAAHAIGPGLQITSPTPDQTPGPVPAFPGVLATPAPSAGSDASETLD
QVEAKLQSLVQEKEEMEQAQASPKRPGPTPLPPSVLTAESYGEPSLDDVNAEGQRLIEAG
RARAGSASFGQAIDESGFSSAASSAQGSSENVKPA