Protein Info for mRNA_5670 in Rhodosporidium toruloides IFO0880

Name: 14038
Annotation: K18995 DHX29 ATP-dependent RNA helicase DHX29

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1524 transmembrane" amino acids 1200 to 1223 (24 residues), see Phobius details PF00270: DEAD" amino acids 701 to 859 (159 residues), 42.4 bits, see alignment E=1.3e-14 PF13401: AAA_22" amino acids 707 to 859 (153 residues), 33.9 bits, see alignment E=7.6e-12 PF00271: Helicase_C" amino acids 978 to 1101 (124 residues), 50.8 bits, see alignment E=3.9e-17 PF04408: HA2" amino acids 1168 to 1247 (80 residues), 49.5 bits, see alignment 9.7e-17

Best Hits

Predicted SEED Role

"RNA helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1524 amino acids)

>mRNA_5670 K18995 DHX29 ATP-dependent RNA helicase DHX29 (Rhodosporidium toruloides IFO0880)
MPPKKSAAKKKKAASNARGFATVSVPKKKDPEEDIAAAQAAAEGGEGGVVKEGGAEAGQV
DGETAEGAGRGEANSSAGEAGAAAKPQDGWDDPETLEKKELQELAERIRPGCDKEINRIV
KVFDYERRIAKTMPGYLWQEQDLQRRIIDLALAERGDESPQPMFDAQDKVIAKVATLYGI
LEQLGFKAERVEQCLRVVKALDLEDCLEWMFLHANSDELACEGPAAPPLQLPDSSPPTPR
PSNSPKSTPARSPAVGKTPASPSPAAPKTPTDGADEAAQASSLRARILAYGEELDKALSS
NADGDEAEAAEADANVKYSKLKLQLSEIQRAQATHKRVTKGKGDRKGAQAMSDEQEKVLD
AQGELLKEKIKTVESDYTFRKTDAEKLYREERTKLDAAQLSARLSGTTLDSPFPSLALPS
TPTSNGLAPSAEINSSTSSTPAANGSTSSSPPSPGRSTADTSANDDEEGDFFGNMLDEMP
TEETTEQGTTIPVRNLSLPKHFSGKTPKVSLEETVRKLDKGASVSFSVISRSRAVRAAVK
VRWSENTTGKTVTHRMDDIACWDEKQAYNYIATLALFDIATSPQGSGLAVNKALPTVFRD
LWDELVAQRQAEDEEDYRRRLKVYRAIAEPRCQEPPSRDQRAARAEKAVAEANAIAGPKE
ITPERAEQIQHEIYQRQSWPTYQEMLRQRANLPIAAYRSSIMTAIDDSQCIVLCGETGCG
KSTQIPSFILEHNMRLGRDVKVYCTEPRRISAISLAQRVSQELGEPPNACGSRNSYVGYS
IRLDSAVSASTRIVYATTGIVLRMLEGSESLSDVTHIIIDEVHERSIDSDFLLIVLREIL
KVRKDLKVILMSATVDAEKIADYMGGCPVVRVPGRTFPVTAYYLEDVVELTRYRLDPNTD
SPYVARNKRAYGGKPRKMIDDVPLDDDDEDDAPANADEVTQAPISKQSRITLECLDHHAI
NFELILILLENLCFYKPELVPFSSAILVFLPSLESIRRLTDLLEAHPAFGSSQFVILPLH
STISNENQSLVFNVPRPGIRKIVVSTNIAETGVTIPDITAVIDSGKHREMRFDEKRQISR
LVETFVAQSNAAQRRGRAGRVREGVCFHLFTKHRHDNYMQEHPQPEMMRLSLQDLALRIK
IMKIGSTSIEETLLNALDPPTPQNIQRAISALVEVKALTTSEEITPLGLHLAKLPMDVHL
GLFLIMSCIFGCLDAALVIAATLNSKSPWITPFGRESEADAVKRSFKTENSDFLTTYKAY
CSWREACANNYEREFCRSYLSLQNLQQIEELRQQFFSFLFDAGFVNITNAERRELTSTRY
GKSRTKFLRVPTELDTASRDPRTVMACLAASMYPKLLVIDPQNGSLRTLANSAPAAIHPS
SVNFGSGRRVDFGQGTRFAAFFQAMHTKKLYVWESGSVDERAVYLLCGNADFQLPAHSIS
VDRKIRTHFEDPKTAIAVKVLREKWKELFNKKMRDPAAPLDPQHEQWLALLLEAFKSPKR
EDDEEKKRQRAEKKPVKLSLTRNG