Protein Info for mRNA_5696 in Rhodosporidium toruloides IFO0880

Name: 14064
Annotation: K07152 SCO1_2 protein SCO1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 62 to 81 (20 residues), see Phobius details PF02630: SCO1-SenC" amino acids 107 to 243 (137 residues), 157.2 bits, see alignment E=2.3e-50 PF00578: AhpC-TSA" amino acids 110 to 214 (105 residues), 22.3 bits, see alignment E=1.1e-08

Best Hits

KEGG orthology group: K07152, (no description) (inferred from 60% identity to cne:CNH02680)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>mRNA_5696 K07152 SCO1_2 protein SCO1/2 (Rhodosporidium toruloides IFO0880)
MLARTANPLARSLARPPVRSIAPVLPLAQRHRYSTQPEANQGPSAPNPSSDQYQNRQRGG
PFTLKAGALFVATGVGLYFYFQSEKQKVQERKRQENAAARVGRPKIGGPFKLTNQDGKEW
TDQDMLGKWSLVYFGFTNCPDICPEELDKMTAVVESISKSHNIDILPVFITCDPARDDVK
AVKTYVKDFHPSLVGLTGSYEDIKKTCKAYRVYFSTPPNASPSDDYLVDHSIFFYLMDPS
NKFVDAFGRSMGAKEVVGKVEGYLREFEEGGGRGSWSEGQ