Protein Info for mRNA_5697 in Rhodosporidium toruloides IFO0880

Name: 14065
Annotation: K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF03587: EMG1" amino acids 84 to 292 (209 residues), 264.1 bits, see alignment E=3.6e-83

Best Hits

KEGG orthology group: K14568, essential for mitotic growth 1 (inferred from 69% identity to pic:PICST_55133)

Predicted SEED Role

"N1-specific pseudouridine methyltransferase NEP1, biosynthesis of m1acp3-psi in 18S/16S rRNA in Eukaryotes and Archaea"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>mRNA_5697 K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1 (Rhodosporidium toruloides IFO0880)
MADTAASSDAGKKGASTLSVSAPTFVPSSKPGSSAIPIEKPPAPKPSRKRPAPGSPPLNP
TMVPTAPKAPKTNADKDSTRRLIVVLEQACLETYKHSAPAGARGGKGEEKYSLLNCDDHQ
GVLAKMGRDIAHARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKGVLIEVNPAVRIPRTF
KRFGGLMVQLLHRLSIRSINGSEKLLKVIKNPITDHLPSQCHKITLSFDAKPVRLRDYLP
TIPDTHSICVFVGAMAHGPDNFADHLVDEKIAISEYSLSASVACGKFCCATEDLFGIL