Protein Info for mRNA_5699 in Rhodosporidium toruloides IFO0880

Name: 14067
Annotation: HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 PF13757: VIT_2" amino acids 14 to 68 (55 residues), 27.5 bits, see alignment 5.9e-10 PF08487: VIT" amino acids 17 to 128 (112 residues), 108.9 bits, see alignment E=4.2e-35 PF13519: VWA_2" amino acids 276 to 384 (109 residues), 39.9 bits, see alignment E=1.4e-13 PF13768: VWA_3" amino acids 276 to 437 (162 residues), 89.4 bits, see alignment E=6.2e-29 PF00092: VWA" amino acids 276 to 439 (164 residues), 51.4 bits, see alignment E=4.1e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (905 amino acids)

>mRNA_5699 HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300 (Rhodosporidium toruloides IFO0880)
MHGLIYYIDGATDTVDLERVTAKATLIDLSARVQVTQTYHNDSPTTLSCSYMFPVPARSA
VCGFAMVKQDGTRVVGVVQEKEEARVTYDDAVQEGKLASLTEQASPDSFVCSVGNVLPKE
TVKIELAYVTELTEGDTSDSIRFHIPAIVGQRYGQQPLFGGAHIPSSSKTAFEFSASIEA
ASAITKVASPSHPVSLELGPDPSLPHAKDLPIANYARVSFSTSTTLEKDIVLTVHASGLD
QPRCVAELHPTDKSAAVSLTLVPRFKLPEVEGQEYIFLVDRSGSMGAWSEGEGRIGMARK
ALVVLLRSLPSTGTSFNIASFGNNVESLWPSSQPYNQSTLDTATKHVDALGANLGGTETR
KALDYVFQSRTKSKPTSVFVLTDGDAWDLDGVISSVKSAVASGTPDKPVRCFVLGIGNDA
STAMCESIARHGGGIAQYVVDGDSFTGKTARLLKAARTPPIVNARLDFGLKEEEEHAEED
FELVEGAAPAYETSQDKEKAPTNLFDSSVDPLADTDSSASKPPPAPPVKPPPPPRIQQAP
RDLSPLYPGSRLHAYAILKSAKDLPETVFLRGELASGQKLELAVPVVRSQLATVESSNFP
PPIHTIAARKLIQDLEDGKHDLGVKDDLDLTKRTVEAAAVRLGKTYSLASSQTSFVAVDE
SEKDKPRKATQYQVIYDSPPHGGAVAFGGAAPAGPHMRRSRMATPMSTFAAIPPPPPAPA
SAVPVVFAPAPAQAQPRFGRMMKAVKSASPFGSSAPPPTDAMQAMSLTHAAPSAAGIDGG
APPLPAGGLFNQYAHSPEQPEPAATPTDPLDAIARHQSFDGSFNPAVLALCAPSASVDEL
VQKLPPSLQEKEGKEKLVATAVVLAYWKREMRDREEEWEAMAEKALAYLRSEAGDVAAEI
VALFA