Protein Info for mRNA_5709 in Rhodosporidium toruloides IFO0880

Name: 14077
Annotation: K06647 MBP1 transcription factor MBP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 689 PF13637: Ank_4" amino acids 228 to 289 (62 residues), 30.7 bits, see alignment 9.3e-11 amino acids 270 to 316 (47 residues), 37 bits, see alignment 9.9e-13 PF12796: Ank_2" amino acids 250 to 327 (78 residues), 39.9 bits, see alignment E=1.3e-13 amino acids 323 to 416 (94 residues), 28.3 bits, see alignment E=5.5e-10 PF13606: Ank_3" amino acids 268 to 295 (28 residues), 22.7 bits, see alignment (E = 2.3e-08) PF00023: Ank" amino acids 268 to 295 (28 residues), 27.1 bits, see alignment (E = 1.1e-09) amino acids 388 to 416 (29 residues), 17.9 bits, see alignment (E = 8.6e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (689 amino acids)

>mRNA_5709 K06647 MBP1 transcription factor MBP1 (Rhodosporidium toruloides IFO0880)
MATIYRATYSGVPVYEMPCHGVAVMRRKSDAWLNATQILKVAGFDKPQRTRVLEREVQKG
THEKVQGGYGKYQGTWVPMERGIALSRQYGVDRLLQPIFDFVPTAESPPLAPKHITAAPS
RPRKKQDVALDLEGMPTPPPVHSRASLGKAAQRRAAALADEDDDEYMGGGRVMTPAGDEA
SEMSQTPSPLGADDGDAYLDGSHAGPSKKRKMAHDPEPLSAHAQLQGLGPLRYARMILDY
FVSESTQVPQFLLQPPADFDPNVVIDDDGHTALHWACAMGRIRIVKLLLSAGADIFRANS
MGQTALMRSVMFTNNYDLRKFPELFELLHRSTINIDRNDRTVFHYIVDIALQKGKTHAAR
YYMETVLQRLADYPEEVADILNFQDEEGETALTLAARARSKRLVKILLDNGADPKIANRD
GKTAEDYILEDERFREQDVGVAGAAAASVNGYATAASLNGAGGAAHISLPMRTHSSETGQ
QIATKVIPDISNLLDTLATSFDAELADKERELTQADATIAALQSEIAETQQTVQQLEQRA
AQHPSLVADEEQLQVELAAKMGKRFRLGWEKWVRDEDQREQQYEQGGASDGPQADLDAYR
DLVEHPPADAVERANALRGRIEEFRHERKRLFDELVKGQAAAGTTTKLVQYRQLVALGCG
VPLDQVDAAIDSLTENLDHARQAEAFVAA