Protein Info for mRNA_5726 in Rhodosporidium toruloides IFO0880

Name: 14094
Annotation: KOG2539 Mitochondrial/chloroplast ribosome small subunit component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 688 PF09243: Rsm22" amino acids 121 to 323 (203 residues), 46.2 bits, see alignment E=2e-16 amino acids 379 to 552 (174 residues), 93.3 bits, see alignment E=8.7e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (688 amino acids)

>mRNA_5726 KOG2539 Mitochondrial/chloroplast ribosome small subunit component (Rhodosporidium toruloides IFO0880)
MLARAGKAAAESAQRVAATNHAAVLDLASIDPYARARQDSAVGSAAHSTRRSPEAARGRA
PKGDIGLPVELREAIETMMTATDAKEAVHNRTQELWHRLRRTTLEPQQGLDVEKVAYDAH
TSLAYLLGIMPNVYLASVTVLETLKRRLELLATEHDDRIGEVWQPDRLVDYGSGTGSAAW
AFEQVWGVQTPSGSPREYVGFDSARAMVELSSGLFGALPRRFTDAGEATSEVTSGRLEAR
SHQVQLPVGETSLAKMNVSRKSYETKKTIALAAFSLGDMPSRTARRTLVKTMWDSGAEII
VVIDRGTPRGSKLVADAREELLSYGRNEVNAARGVDSEHEAEFDEVAMELREAGIDIAPD
AVAELSEAEGPGEVDPSLGSYVLAPCPHDSVCPAVGPSKGYCHFSRRLQLPSFLQAVKET
NRGESDVKFSYVIIRRGQRPATAEPKLSAFAEMLASLDKAEKVSKSETTDASSPPSASDT
TVVSTASNASSVDPAVELTFPRIIAPPMKGSGHVTLDVCAPSGELERHIVSKRQGRQIYY
DARKSSWGDAFPHTGSKGAEPSPYAREVPEEKLPNQLGDKFASSSKRRVKKAERQAGRAA
AIDFRYEDRVEAREERAGKRMQKKLQREAREVREAEEASEKMWREEEEKFLAQATKRRGK
KNKAFDEEQDYGIVEYELNEEGELVQKR