Protein Info for mRNA_5745 in Rhodosporidium toruloides IFO0880

Name: 14113
Annotation: K11665 INO80, INOC1 DNA helicase INO80

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1591 PF13892: DBINO" amino acids 429 to 558 (130 residues), 162.8 bits, see alignment E=8.7e-52 PF00176: SNF2_N" amino acids 693 to 977 (285 residues), 205.2 bits, see alignment E=1.9e-64 PF00271: Helicase_C" amino acids 1264 to 1376 (113 residues), 66.5 bits, see alignment 3.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1591 amino acids)

>mRNA_5745 K11665 INO80, INOC1 DNA helicase INO80 (Rhodosporidium toruloides IFO0880)
MTSLSRLLDGPEGANGYAASPIASSSTQPAPAPMAAPPPKRKRPSRAAAAFIDEEDIANR
RSSLRQSTRPARRYNDELYDDGNGFLGRSNGRSSSAAIYTQNGEEVASDEEGDGLLRSTS
HIWREPLKTYVYNLHARRRQVEQDVEDDEASRKFLVAARAVEMAEKRIPAMRERRVVRLV
ELEHETEVRAREEEIARTKAEEEDSKRVKKEQEKEERLKKQREAARRKREEDRLKREHEN
EQRKARAEEARIAKLQEAERKAMLTPEEREAEDRALAEKLAREREEAAQRMREMEEELLT
SGRGARKRRRPGEDLEADAADALSSFGMYAEYDDFDDEDDSGVFQAPDAKGRKGKGASRR
SSSLAVDTPVLPPGAYAGPDGQYYDAAGNPLAWPPPRISESPMVGDDDMYEGETAKGPGK
KKVKLSPEELERKIWVQIARKDIPKVSKVQQQQTTSRQFFSKRLAAVVSREARRAATRSK
PTKDVQTRAKRVMRELMLYMKGNEKREREARKKAEKEALEKARKEEEVREAKRQARKLNF
LITQTELYSHFIGNKIKTSEAEESADTAGEAKAPVAAEPSASLKAAMAARDTQGELRDLN
FDEDDEENAALHARRNAQAAVDKARQAASAFDAAAKEAAQPAASTSNAPLDFDGDDLNFQ
NPETGGERVVVKQPKMLACTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSIALM
AYLAEVHNIWGPFLVISPASTLHNWQQEITKFVPNLKALPYWGNTKDRAVLRKFWNRKSI
RYDKDAPFHVVAVADEKYFNQVKWQYMVLDEAQAIKSASSARWKTLLGFRCRNRLLLTGT
PIQNSMHELWALLHFIMPSLFDSHDEFSEWFSKDIEGSAENKGAMNEHQLRRLHMILKPF
MLRRIKKNVQNELGDKIEVDVYCDLTPRQKAMYRTLKENISITDLVARASTLNDDDSVKR
LMNLIMQFRKVCNHPELFERADVTAPFALANYNKTASLIRDPDVLEVPYATHSAIEFTLP
KTLYRDGGLLHVSGSGSRAGSDSFYLDRLLNIWRPDHVHSSLKENESPFAFTRALDLSPA
ELYEAVSAHGIFRLGLSMKRQADVDSTTFYESSLDDADTPIRKGFSGLVLPSPAAKVVAN
ASGRQHGLTPLAEIERNFSRSSPLLHPDARFYYDAAVAPAIDISCSDRSFAYENEQERFD
DLFHAAFFGLPPSSRESREAIQEYEDAMPGFSPQGIVDLTEPSHLPLPSMQVPQLQKLIL
DSGKLAKLDALLTKLKAEGHRCLIYFQMTRMIDLFEEYLAFRQYKYLRLDGSSTISERRD
MVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDSDWNPSNDAQAMDRAHRLGQTKQ
VTVYRLITKDTVDERIVQLARNKKLVQDAVVGSSGAAAPSEGPAKANEVVSLLLNDDELE
ESLRQAEERRKRLEETKRDAGQRGAAKREDNRRQKKAADAEQALKPSGMGVDDAEDGFSF
FADINQTAANDDDAEQPAGSGNETPQPQAKPKAPRKRKVELDENGQPKAKRKRRTKAEME
IFRAEEAERKRKREEERLAKKAEKAAKGGRR