Protein Info for mRNA_5768 in Rhodosporidium toruloides IFO0880

Name: 14136
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 41 to 64 (24 residues), see Phobius details amino acids 75 to 99 (25 residues), see Phobius details amino acids 120 to 144 (25 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1266 amino acids)

>mRNA_5768 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSTASSPPSSLVLSATSSVLLLTLLPLPLLRLRRSFRPLTLATALTLASIVALAVAASFA
LVALVNKDGERTWTLVGGTLACVALILVDLSTFSLAHTLTKLARPPHSTSLTHHRPPRSF
LSLFLLALLLTLFLSSTTLHVALLCLPSLPYLNLKTLAVARGVLHALCEGTIVLWGAGRW
REREKREGGEEERLPSQGWRDVSAPRDVEAGRNALESSKVRSLALAFLALQALAIALDIL
SAALPLRSSTTDETVPQLLLFGTATSPVGNVVLAALGWVRWMGMSEIVAALAAKTRPTAL
PPTSTHLETSLYHHPHSPPPTPTPTPSLRPLPDLPSTPPSPRYERLPSSRAQVQQTRERK
SMEKSATTPGQGSVGSSFLLLEVDAEEEEEEEEGTFQPSTTHAQPEIEVEPREEDLVVPS
LPVRQAGRLSPSLPPMMALPLLTTPTGSPISRHRPHRSLPTLLTGESPSRPFTPLLTPVT
PNDERPSPLSRAGSTSPTLSRWRLPRSSEDKSPSIPPSPTTGKTSAPPSPRKLRRGRGAS
VSSVPTLSLGPPVTLDAEREKGTHTPASSISRATGRRRSGSVGSILRSFTAGTGGRPSME
TKASAAAGPGLWWDVEPNEEEDDPFVRSAPPLPLPASSSSVSMSRASTDGEPSTDEGSGA
VTPLRLKKALLEAIQEPDGGDASLASPTRRIDDDEMERMLTPPPPHIEDFDSRNKHSPSA
ASSIAYAYRARSASQSSSGSVFREHLDMSDGDTSSMPPPSPSSSLALSTFAAFGGGGRTS
VPSSPVLAPRRRTDAMISPLMLPRRVASEGANDSSTPQQVASPTPASTRTSSPSITPKAS
RLPRRLLRQKRPSILSLRSNSAFSTSPASNATPQRRSPSFSPLPTRSSTVSASSNSLFSS
PAFASLRRITTPRRSPSPVPSNRPSESSELSFACRGLVDSSSDFNVSLANTFPPFGAPAR
PSQTGEEVEKVETPSSVRTKRRSRTSKGIRNAWWKQLPSGSRPTTLYRQNSLASHRIRRT
SAPVRSSGTYSRPPSYGSGSSAARYLQASPSEGGVGGSSSGHIRSVSLPLPLPPVPSTPP
PSSRFELPAISDFSPIGSSIFHLPSRLSGGSPRSTRSRGSPKVSARVAVPVTMPSASFAD
QQSLRETSSYDTANTSPDYAIAGERFPTTPTPEPLAHELHELTSLVRSFTGSPGGEISTS
DGSATPTSTISSLPFTPLSPVFSLDPGSPTLTYSRARQTRGDGDAEEEIELMSPLTPASP
GFGRKE