Protein Info for mRNA_5770 in Rhodosporidium toruloides IFO0880

Name: 14138
Annotation: K15171 SUPT4H1, SPT4 transcription elongation factor SPT4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06093: Spt4" amino acids 7 to 84 (78 residues), 104 bits, see alignment E=1.8e-34

Best Hits

Swiss-Prot: 53% identical to SPT4_CRYNJ: Transcription elongation factor SPT4 (SPT4) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)

KEGG orthology group: K15171, transcription elongation factor SPT4 (inferred from 55% identity to lbc:LACBIDRAFT_185531)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (109 amino acids)

>mRNA_5770 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 (Rhodosporidium toruloides IFO0880)
MSSTKKLRACLMCSFLATPAEFRKQGCPNCEDKLEMKGDADRVLSCTTGQFDGVIAVINP
EESWVAKWQRNDKHVPGVYAVRVTGQLPDEIVYDLEGRGIAVHSREMDD