Protein Info for mRNA_5774 in Rhodosporidium toruloides IFO0880

Name: 14142
Annotation: K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF13639: zf-RING_2" amino acids 5 to 48 (44 residues), 53.1 bits, see alignment E=1.2e-17 PF13920: zf-C3HC4_3" amino acids 5 to 48 (44 residues), 28.4 bits, see alignment E=4.2e-10 PF13923: zf-C3HC4_2" amino acids 7 to 47 (41 residues), 36.3 bits, see alignment E=1.4e-12 PF13445: zf-RING_UBOX" amino acids 7 to 45 (39 residues), 30.1 bits, see alignment E=1.4e-10 PF17123: zf-RING_11" amino acids 7 to 34 (28 residues), 34.8 bits, see alignment 4e-12 PF00097: zf-C3HC4" amino acids 7 to 47 (41 residues), 30.8 bits, see alignment E=7.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>mRNA_5774 K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126 (Rhodosporidium toruloides IFO0880)
MSTIDSCGICLDTFHLSDTAVALPCKHLYHEDCLVPWLKTSGTCPTCRFALVPQPGQPGY
EAGGQANAEGAQAGEGGTDGAEDQRIPEIAGGSSLPGSWIWPAGEGEGEEGGSEEERRAG
ENEG