Protein Info for mRNA_5782 in Rhodosporidium toruloides IFO0880

Name: 14150
Annotation: HMMPfam-Protein of unknown function (DUF3533)-PF12051

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 347 to 365 (19 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details PF12051: DUF3533" amino acids 33 to 365 (333 residues), 152.2 bits, see alignment E=1e-48 amino acids 384 to 444 (61 residues), 54.8 bits, see alignment E=3.9e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>mRNA_5782 HMMPfam-Protein of unknown function (DUF3533)-PF12051 (Rhodosporidium toruloides IFO0880)
MSEEKLRDFETSLWDPRMKGQRRQMFKILRMYFVLCSAAVWACLSIFWGSTYLLEHYFPN
AKVYVYDFDSTANPNPLLGPAVVQYLRSTLDAPVHMGVIIRDPAGKTFDDVAREIVGEKA
WAAVVINANATSNFREAVAGTGGLLDGRWAPEGAISLVISGARWYQVTDDYLLPYLGEQM
RTPTQQASRQAVAQYLSTATPATLGGLTQTQQAALSTPFSYQNTDLRPIHPNQWSGAAPQ
EAGLIYYVIFAFHISIFLFFSRMPFLGAMKKQGVRMTWLSTCALRFVPTLPAYVLLSLSY
SLINKAFMIPVDGNGYAKFGPQGGFMIFWRLNLMTLFALGFAMESMITLLTLKFFPFFLI
SWYLLSSGRGGTLQHVLTPSLPRIILNISSSFFPPTFAEKFYHYGYGMPFYHSITGARYI
MYGTRDRLGLNFGVLTAWTVLSVVTTCLYEL