Protein Info for mRNA_5830 in Rhodosporidium toruloides IFO0880

Name: 14198
Annotation: HMMPfam-Mitochondrial protein Pet127-PF08634

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 PF08634: Pet127" amino acids 502 to 772 (271 residues), 340.6 bits, see alignment E=3.7e-106

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1017 amino acids)

>mRNA_5830 HMMPfam-Mitochondrial protein Pet127-PF08634 (Rhodosporidium toruloides IFO0880)
MLALQSAARSCSRRCRTCPPPALLRRTFTISPSIQLDPAPAQHASQSRPLIPELQTPLRL
GTKDKGKQRAQKGVRESKEWNVELTAASQGTAQATSKLSGSKRRRLSKKRRQAARQVDMG
DSQATLRAEVKRVMERGEMVGPTPDQRFTFAARRFLSQTQNEVPTKELKLLRGRISALQA
RLRPWESMTTGQKNEEVERYRSVLRLNGLFHSASPPKSDPPSESAALEAEPAPSDKPTRS
GSRSRSRSRSDIPAHLAEGGQPSPRHTPPEPAPIDRIADRERLMKELEVQWPRDMEDMEQ
AIRIYGSRIVQIETSNGNTSRVIDPKAPKPKDRNGPFLLDKIAQTLAVGGDAAMADAVKE
EKDLMKEKWWKPNLATTKLAGLLPQTRKSGPRRQKPKPASENKAWDGSDPTLYQSEQPPV
EPIDISTYKHVLTPGNISFDSIPPPGGPVPIATLAHSLDRVLFNPGVHFLQDPRSGVYNF
ARDTLENVPPIDKFDFSKLPQYITSSKDEALQGLAKAEDRKFVGSTSSTTGMLCQIYFWL
SKFKPVNLSMLSQGFEDSDRGFSFGQKLPASVVLNYSDGRYAIDADKSIDKTADLNVLRD
YGHLMEKLLTTEASEFKRFLVDAEDPAPSEANDRQAYHYAKTKEMVLRSQLDACNEYLPN
KTFDLKTRSTVAVRQDRLNWEAAAGYTIDRLRGAYESFEREYYDLIRSAFLKYQFQARIG
GMDGIFVAYHSTERFFGFQYVPIAEMDEALFGSHEAGDQVFRLSLGALEHILTEATKCYP
DETVNLTFAAQEDTDVLRVFVAPQREMARLEEGEARAEESALEGEDKKQVLAGLVEGIDM
TLLELKGSNYLDGVFQEGPVSVERRSTDKNVFTEFLNRDAEVPTWQVGYNVESSNTKTGG
PTPAGAIAAFFADTRSLQRTFSSVILPAGITPADVAAAAERAREEGVELDESDLAARFPL
GDGISYRGPTRYVENLRKLARDGMERRQAEEEKRQADRGDAKAQIVEVQSKIVVREA