Protein Info for mRNA_5844 in Rhodosporidium toruloides IFO0880

Name: 14212
Annotation: HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 transmembrane" amino acids 214 to 236 (23 residues), see Phobius details amino acids 242 to 266 (25 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 362 to 380 (19 residues), see Phobius details amino acids 386 to 404 (19 residues), see Phobius details PF01545: Cation_efflux" amino acids 219 to 410 (192 residues), 84.3 bits, see alignment E=1e-27 PF16916: ZT_dimer" amino acids 416 to 491 (76 residues), 27.3 bits, see alignment E=3.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_5844 HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111 (Rhodosporidium toruloides IFO0880)
MKAQKPTFVLHEEAESSPASRSTSRERAVPASPHHPPPLTTHLSYRRYSHDEGTRTPPSH
HLCDLDEESALESTGGESENDALLANGRGARGTPKRRRTLPQNGYGTLGSPHGNYLTLNE
GAPFKRTESILRLTGLIDDRAGEYEKFRKTDEELKKMPKKVRKFYERQNEQLDAFIEVDE
ILDNARAKAATGELLPVGLHSSEKQDDHRAAVKWAINFNLAINVLLIIAKIAVVFLSHSM
SLIASTVDSAMDLLSTVIIFGTSRYIEHRDWKSSYIYPTGKRKMEPLGVLIFSVFMISSF
LQVFIESVNRLFDKNLEFTRLPLVALLVMVSTIIIKAGVWLSCRAIKSASVEALQQDAEN
DIVFNFFSILFPFAGQLIGFRYLDAMGGALLSLYIIVEWVGTLLDNVRKLTGRRAPPQEH
QRIAYLLTRFSPLVTAIQHLSLYYSGEGMVCEVDIVLPASTSLTASHNLGEACQYAIEQL
SGIERAFVHVDCTVNPHSGHLER