Protein Info for mRNA_5858 in Rhodosporidium toruloides IFO0880

Name: 14226
Annotation: HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 PF07716: bZIP_2" amino acids 424 to 466 (43 residues), 27.2 bits, see alignment 1.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>mRNA_5858 HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959 (Rhodosporidium toruloides IFO0880)
MLDPVGFRQGQETQPPHPGWLNPGRLSTHSLDDHALIDVAAHATGDATTTFDNKNDTTAS
TSDSDLMRLLGEFTSGPGALTPALSPSVQSFNTPGLSSPSLSVPVHDPSVISTGNAFVSA
TALGLDALAPVTSVHSNEEHVKPQLSNPFAQASKPFDAGDMSLPFDLDFTKFTGFDVVTA
FPVLDVSPHLVGPSIKSGDAPSVVDPLVFDSSLDSPLGLSGSLSTETSPLSDLLASPLFS
VGPDSAVPSATISELPLPHVAHGTPLFGSTSSAALPTPSLAAPSSDLAWFPPLPSGPSSA
VPSPTILRPLPAAPSAPHPSPSMTPWTPALSYLDPDSAPSSSSTSKPKRLPTGFRQSSAP
LLPLDAPIQPRNSVIPSSTSRKRKTAAAEKALAKRGRTGESVAPEPAAAEGEELPEDIVA
AVERKRLQNTLSARKSRARKQARLQELEQENEALKTRVAQLEQALALAMQA