Protein Info for mRNA_5882 in Rhodosporidium toruloides IFO0880

Name: 14250
Annotation: K15732 CTDP1, FCP1 RNA polymerase II subunit A C-terminal domain phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 887 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details TIGR02250: FCP1-like phosphatase, phosphatase domain" amino acids 154 to 350 (197 residues), 189.4 bits, see alignment E=2.3e-60 PF03031: NIF" amino acids 160 to 348 (189 residues), 81.1 bits, see alignment E=1.2e-26 PF00533: BRCT" amino acids 597 to 655 (59 residues), 27.7 bits, see alignment 4.4e-10 PF12738: PTCB-BRCT" amino acids 602 to 651 (50 residues), 26.5 bits, see alignment 7.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (887 amino acids)

>mRNA_5882 K15732 CTDP1, FCP1 RNA polymerase II subunit A C-terminal domain phosphatase (Rhodosporidium toruloides IFO0880)
MVLPATSLSLPRALPFPITIQRIHAPVGSTVRKTRRLLTYSFIPAKPDEDGNRDRQVREW
ESPVEGEVVSWAIKEGDVVRDASRPVVQVKEPCTHDVQLNGLCALCGKDLTAIDYTGFSD
TSRATISMAHDIGGLTVSLEEAHRLEKATTARLLDAKKLSLIVDLDQTIVHATVDPTVGE
WLQDPKNPNYKALEGVKRFKLQDESPATRNKPKKYRKIRIKQVDPSKGEEADDESSEDEE
EDEDDGGCWYYIKMRPGLPDFLKRVAEMYEMHVYTMGTRAYASEVCKVIDPDGGLFGGRI
LSRDESGSMTRKSLQRLFPCDTNMVVIIDDRADVWDGSPHLVKVIPYEFFVGIGDINAAF
LPKKKELHPPPKPKDAQAAPESEGTAASPSPNASSASPAASTSDTSASPAATEGSPRSTT
PSTTPPPSSPDENPHHVPDALLSEPTTVSDLLVSSSPDEEVSPAMDEASTVAMEAIHEVI
EARPLEKRQKEQHEAHLHQHHHAAGEGGHEGAKGAEGETAGETVETEEEYEEEAVLKDDD
RELDRVFDILSNVRERFYEQHDAKGAADVADIIPAMKAQTLRDTHLVFSGLVALGSRPED
SEYWKLARTFGARCSADLSSSTTHLVANGWGTAKVHSAQRNPRIKIVYPEWLLESVARWT
RVPEDAYVLNIPATSSTPGSPIRPELSGGEDDEDVDAIRLDGEADGAETPVTVPDGDLDL
ADLDWGDAMKEVDDLLLETDDEDTASVVNGGDTTDGESDAGPSTTTAPRPPRKRARMSTT
PSDASAAPPDTESPLQKRVKTARSRKSGLKRSVSAAALERSAEKAAEDGSSESQSNGSVK
SASGRTSTAEGNGDAVSAAASVASSSIDSDDEDLLASMAADLEQGWT