Protein Info for mRNA_5888 in Rhodosporidium toruloides IFO0880

Name: 14256
Annotation: K00688 PYG, glgP glycogen phosphorylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 TIGR02093: glycogen/starch/alpha-glucan phosphorylases" amino acids 74 to 875 (802 residues), 1043.2 bits, see alignment E=0 PF00343: Phosphorylase" amino acids 162 to 875 (714 residues), 983.7 bits, see alignment E=2.8e-300

Best Hits

Swiss-Prot: 49% identical to PYGL_BOVIN: Glycogen phosphorylase, liver form (PYGL) from Bos taurus

KEGG orthology group: K00688, starch phosphorylase [EC: 2.4.1.1] (inferred from 59% identity to cci:CC1G_02204)

Predicted SEED Role

"Glycogen phosphorylase (EC 2.4.1.1)" in subsystem Glycogen metabolism or Maltose and Maltodextrin Utilization (EC 2.4.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>mRNA_5888 K00688 PYG, glgP glycogen phosphorylase (Rhodosporidium toruloides IFO0880)
MSNGADSTPTTPKATHEANPFEKLANPRRVRAHKRSATGFIPEGPKKLSEIFPGDAKAWK
TAIAKNAESLKTDVDSINAQIVHHVETTLARAAFNVDEMAMYQAAALSVRDRLIHNWDVT
QTFHTQARTKRVYYFSLEYLLGRGYDNALLNLGVRQPYNEGLKGLGFNMEDVIDVERDMG
LGNGGLGRLAACYLDSTSTLDIPCWGYTLRYSQGIFKQIIDSSGNQVEVPDPWLENQNPW
EIPRLDNAVEIKFHGEATPGEGGKGPGTWTGGLDVLAVPYDIPVPGYKTQTTNNIRAWSA
RGKVSFDLAKFNAGDYDAAVREAEEAETITRVLYPNENFDKGKALRLKQQYFWVAASLHD
ICRRFRKLRVPWSEFPDYNAIQLNDTHPTLAIPELMRILVDEEGQPWDEAWEIVRRTFSY
TNHTVLSEALEKWSVPLVEWLLPRHLQIIYEINLDMLKDVEKRWPNDRARLARMSLIEEG
YPKMVRMANLAVVGSHRVNGVAALHSHLVQQDLFPDFVEYLGRDHFGNVTNGVTARRWLL
QCNPSLAKLITDTLGSDEWVVNLDKLEGLTKYAKDKAFQKKWAACKQANRERLCDYIEAT
LGLTVNRHALIDVQVKRIHEYKRQFMNILGVIFRYLQLKKMSPADRKRLVPRLSVFAGKA
APGYYIAKLIIRLCNAVSKTINADKDIRESLSVAFLPDYSVSLAEIIIPASDISEHISTA
GTEASGTSNMKFALNGGLLLGTLDGANIEIAEAVGDENVFFFGHVTPDVPKLRRAHHFGE
VQYPAELLEVVDAIRSGMFGEAGVFEPLLGTLFEGKDHYLVSDDFLSYLQAQKMVDEAYV
DQPSWVEKTINSTARMGRFASDRAVLQYAEEIWNIEPIKIPQDA