Protein Info for mRNA_5906 in Rhodosporidium toruloides IFO0880

Name: 14274
Annotation: KOG2568 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 197 to 218 (22 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 262 to 286 (25 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 332 to 356 (25 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details amino acids 416 to 439 (24 residues), see Phobius details PF06814: Lung_7-TM_R" amino acids 150 to 445 (296 residues), 199.7 bits, see alignment E=3.3e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>mRNA_5906 KOG2568 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MRSALLLLGLLARCVTGYQVLVTDQDEVRQVCSGMWGKGAQDPFIEVLFSPSSRGQAALV
VYEWQDAKYLGVGADGQQGDNDWSEDRVYICTVDAQQKGLCTTDQLGQFVTSASTPAESS
IYTSPVRFDSSSASDAPTTNSGRGPYRYEVSKTGYYCAGIVPVALEGAKNNSTFMSVVDF
ENVFKGHLPASEYPKVAFYRILFLVYLGFGAFWAVLSWTYRRDLLPLQKYITATVAFLVV
EQMFVWLYYRFLNNWGHPGVAGAYLFTIAALNAARNSVSLYLLCLASMGLSIVRPSLGGV
LARVRLLALFHFIFGLFYSVGTVTIPLEAAGFFVLFFVVPLSISLTCFLLWIMYSLNSTI
SDLGARRQTYKRKMFRRLYAILLGACISIALFYIASSITFSTRLDPGFPAKTWKWRWLLI
DGWLSILYAAVFFAIAFLWRPSGTNRRLALSDELPMSENEADMYDVDSMLPEEDREDAGE
LKGESYPLTRISGDGRREHVVFDVGSDEEGEEDDEETPLGHGRNGKSNFERRVRRRSSST
DGRSDGEDGFDITRQHQAKKEEEEEPPEYRPYKDD