Protein Info for mRNA_5928 in Rhodosporidium toruloides IFO0880

Name: 14296
Annotation: KOG3472 Predicted small membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details amino acids 33 to 33 (1 residues), see Phobius details transmembrane" amino acids 28 to 32 (5 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details PF04241: DUF423" amino acids 25 to 112 (88 residues), 60.6 bits, see alignment E=7.2e-21

Best Hits

KEGG orthology group: None (inferred from 43% identity to cnb:CNBD2100)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>mRNA_5928 KOG3472 Predicted small membrane protein (Rhodosporidium toruloides IFO0880)
MPLLSTTSTLAWKAGALLTSSGIVAGAFGAHALGPRLGEKAGTWTMASHYAIMNGIGLLA
ISQHPTYSKRIAVPLIIAGTTLFSGSIFALLLYRERMGAWTKIVGPTTPLGGLLMIGGYL
SLLF