Protein Info for mRNA_5934 in Rhodosporidium toruloides IFO0880

Name: 14302
Annotation: HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 74 to 95 (22 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details PF00153: Mito_carr" amino acids 28 to 106 (79 residues), 35.7 bits, see alignment E=3.3e-13 amino acids 124 to 202 (79 residues), 51.3 bits, see alignment E=4.5e-18 amino acids 249 to 330 (82 residues), 53.1 bits, see alignment E=1.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>mRNA_5934 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 (Rhodosporidium toruloides IFO0880)
MEAEEAFAGSEAAVQEAAKQAYLNPWVIVASSSSAISARVFTHPLDTIRIRIQTAGHPVP
PLRELVPAPRVRGLYAGLPVAIGFSVPALSVYLATYEASKRYFSQKFLPQDREASLLQQI
PVFVAAGTAAEFASGAIWTPLDVLKSRLQTGREGTSAIALTRKIIKNEGWMGLMRGYWMG
TAIFVPNISVYWCIYESLKMRFIPNYSSYRPSSASSSTSAQPDSPSASSTSPAPADAATE
TSGIPITLRYTLCSVSAVAVAACTTSPIEVIQARWQTSGGTVKGGISQIVRDLWRQEGAK
AFTRGLGIRVAYAIPANGISMTIYESIKRWKGLS