Protein Info for mRNA_5939 in Rhodosporidium toruloides IFO0880

Name: 14307
Annotation: BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 439 to 455 (17 residues), see Phobius details amino acids 475 to 478 (4 residues), see Phobius details amino acids 502 to 525 (24 residues), see Phobius details amino acids 563 to 583 (21 residues), see Phobius details amino acids 644 to 651 (8 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>mRNA_5939 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... (Rhodosporidium toruloides IFO0880)
MPPDRMDPTYHPLIDETPLAHRRRKTQPSRLSPLRCCVWSAALLALVCGAGITLFFYNVF
KEAYKVAAAPHRVQHANETLLFQGPGIADNESHIIRSFFGAKDKGGVETFDLKAAIWAKV
GTEDEEEQDASWTLLYSEDVLKDVEVTAKSLKATQRVTLPRSLLSRLLDSSKSQLQASFA
MLPSSSTPVDPLLDFHTFRSSRNATYFSRDPLHPLAPLLPGPVDSKDLLKRFLGNAAVTQ
PLLRRSTVRKGKGTDGQSAEKKVVQLVTSSIVTMAKDFAVYDLEGFNASLAERNRFRALY
CARDASSNPACIRSFSTDGHFENLIEFDNSVGGDLSMAKRQGWRYGPFLTTRYGLAGPKD
LMRVKGNETDDLSFDWHITWTAASPLRLAVSSPFSIAFDAVERDKVDVHEEASSQDFVEI
IHSAMGHHVRPGSRPLARVAVRAVGAVAGFLQVPIDAHYWLTRSLSTGISLPFELAYITL
TASDLARDVIKALIRRPSFFDSVLLPTILFLISTSILLSQVNLLFGLEWQWGGPKGFVPV
GLERRRPTHSERASRRADGQLDWRWRVLLVVATAVLLDYGPTLPHILTSSYTPPSDDAAY
KLLPRHFLTHDSILFATELLAKLSQAHLSYRLRTFAGTHRISAILVLLHSICDHGPTILT
SFFGSWEARPPLYVSDLVAVLPEAVLAWQAVRYPTVKQEEEEEE