Protein Info for mRNA_5947 in Rhodosporidium toruloides IFO0880

Name: 14315
Annotation: KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1546 PF00176: SNF2_N" amino acids 605 to 1150 (546 residues), 203.6 bits, see alignment E=3.7e-64 PF00271: Helicase_C" amino acids 1394 to 1489 (96 residues), 39.7 bits, see alignment 5.4e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1546 amino acids)

>mRNA_5947 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily (Rhodosporidium toruloides IFO0880)
MLYISSHCALHEQPKAASEEGKRRESFVSVGDDAAEEGEVDLRHLRLACKGCSECTGCTM
DFANGFEEDDNPVLAPRPSTSTAAPTRKTTASSTAPARQADTLDLTGDSPPPEQRQRSAV
TQSEAARRALDAYLDEKPTGAGMASGAAGGFGSYAAGSQGGFGGTSQAAGRSQAGPSRVS
PYGTQGGSSNGFARYAGQGTPTTSQQTLSPSAAFGSSGGFVQQPRVVPSTSLGRIPVISS
ASSSRVPSAYLPSQSPQRSRPSASAAAALSGGSGFSSAKLLHQTQVALDQAAQSAQNGHA
QHYEAQVSSGSSPAKGKAREDVLDLTADDQPSDDDDLVIDETPVCIGEVTTYGLVLTPVD
EIIPPPPPPAARPDGRAWTIDELDTLNEQYRRAKERYAVPLPVHIFRDDRTYNGGAWREM
LRLITPVKHEVFGFVDYKAADVLGPLLGDGYHGTGVTKGGNGKVFCEAFVDRRGETNPCL
LKLRLLLFARPFDVEKVAETLENAHPPLWLQHPITYIAAQHNNARYVNPHNPAPGVGGRG
ADAERRRQALVSGMYGGSGLNATKVAKAVDVQKQQVEEVFLNLKSGTDLDEVTPPPIVST
PLYPHQKQALSFLLDREKLIDVPPQDRPGQEPTVVSLWKRISDPYGRPTGWQNLVTDLHI
AGARPPPQARGAILADDMGLGKTIVVISLVSSTLADAREWAKQPLEKDKLDPRFDETVKK
SDMQGKAVAVGEFRSQLWGIAQEAAAEPAPTTKAATKKKQAKERREKKKEEAVQSRFEKL
VCRSRATLIVCPLSTVQNWESQFEEHTAMVEVDAAGGKTLTVEDDTKPIKALKRKMRIAD
ESDEDGTASDSSMKSAPSAKAPKSPLRIYIYHGPGRCDDPIKLADHDVVITTFATLATEY
SKQVRAEEEREDEEEAAAKRAAEEEDGIVEVYGFGPNGEILTRPPGAPVAEEETKPKKAK
RKRKRVEGSGVSALQAVQWYRVVLDEAHIIKEHKTIQARAACELSTSRRICLTGTPLQNS
LNDIFSLIRFIRLEPFTDRHVWNQYIGVLAQKGDDLASERLKVIMRYLALRRTKDTKDSE
GKPILSLPPVDHKQVLLNFTEAERAFYASHHSRYKHDFEQLQETDSVMKNFCSILTELLK
LRQICVHPALLQDSEDRAASAGEGSSLAATIEKHGISKVRAIQLLALMRDAGGGDCSECG
STMPSFARANVEELGDEEDSKPGRKPAKKIRKAVITQTASTSAATSEDDAAGPSNEDVPC
VVTRCQHVFCAPCFKRFIAPSWPDVRSDVKAQCRLCQAEIQPALEAVEIGAREFQRALER
SADEGPGVRGKGKKAKKASSTRLFEHSTKTRALLADLLPFSQCNPFSANHDPSWSPEGKA
PVTGFQPVQGEVVKSVVFSQWTTLLDRLGDALEAEHIQYDRLDGSMNREQRAAAMYAFKT
DPRCEVLVVSLRAGGVGLNLTAGRRVYLMEPFWNPAVENQAVDRIYRLGQTKPVQTIRFI
MDKSIEANMLKIQKRKMDLANMSVGRTLSKLELAKERQKELAMLLD