Protein Info for mRNA_5954 in Rhodosporidium toruloides IFO0880

Name: 14322
Annotation: HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>mRNA_5954 HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665 (Rhodosporidium toruloides IFO0880)
MLSRALLISTLAAVVRAAEGEEPESSPGHWSRNDKILIAHAVFGTLAIVLLTPAALLLAR
IGRSSRWFPGHATLNGLSVVFIIIAFALGVTVVEGEFGQDFHHSLGLALLVLFLVQPLLG
LAGHFWARPSPLTSAAPSWGLPRPSPIRILHILLGLTIVGLGYTQVINGLYIEWPNKSEA
ATETPLAVKVIFWILFALFIVAYVGTWIVQAIRGRGREGRASLSSAASSNNALVGTPKTA
GARDMSSANV