Protein Info for mRNA_5956 in Rhodosporidium toruloides IFO0880

Name: 14324
Annotation: KOG2238 Uncharacterized conserved protein TEX2, contains PH domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1241 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details PF10296: MMM1" amino acids 268 to 359 (92 residues), 24.7 bits, see alignment 6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1241 amino acids)

>mRNA_5956 KOG2238 Uncharacterized conserved protein TEX2, contains PH domain (Rhodosporidium toruloides IFO0880)
MVGSFVFALTYLLGGITFLPLCLAVLLAFLYYTSPVVRVPRKTGIPELAAKSHSTASGEQ
EDEVEPVNVYRAGWLTVRRTYEPLKVGNDGTYVGMLASGYRSFMDNRSRDPRRSKPKDRF
FAVLKQNILFLYEGEDQNECWAAIEVSAHDIVIFPDGNIDGELYVKRTAIQLKPRRTEED
AEDATSPTGHAQSDETAYDLETGKPLPWFIFAKVNSDKEDWYHSLQLASRLGNPPATASI
ARDRALFDSEDMARLVEAIDAQPDSIPMRWFNALIGRIFLSVYRTSSLENYLTSRIVRKL
KRVKLPSMLSEIQVREVNVGASVPLFSKPMLKDLTADGDASMEVHVAYVGEARVTIETEA
TVSLGSRFKPYTVRLVLAVVLKELEGTMLVKMKRPPSNRLWFGFTQMPKMVLSVEPVVSA
RQIKWSMVTGPIESRIRELIMESIVVPHMDDLSFFSTLAQPLFRGGIYGAFLRADKSTAS
ADELDSPSDKKNEVDPSTDGPAEEDLVGEATPSVSKGNEVKEAVSSATKESGAQLRAAAM
RRRRSSEGDRPLDLTPMSTSPAATPSVASPRSPPSASSSVTSLAGLSASLASWREKNSSS
TSMNGSNGASTSRTTTRWFSKSSTLVPSASSASTTPAPSVRTNDSTDSITSASSATTATG
EAPTPVQPEVSASQLRDILAKRAEERDREREKEREKAAAVAAAVDRVGLPIVEAQAEELK
EESEERKGEEGDVAGEAAPTDQETPLPLNDPSLNTSTPVSDPAAAPKPPTLPNRPSFVKA
LPTPPPASPAASTTSRDASLAAPPPLPRRHSPSASVDSGSTSTTASTASSLLASWRTKVP
TSAAERSEALSAAKESMKRWGANWAAKRAQAQQEKEERAKRVEDSDRPVGESPEKERGGN
GGTGEGNGGGYRDYRKGKSMSSGRGGGGIADYFGTNGSSDSLVTPKTPPRPIPRAPTTAT
STHTAGQLLSSASSTSSGHFAPSSPSASTALSTSSALANSSPSTSPSKPSILASGPPTMS
AGAGYGRRMMTLPGIRDEDKRKKVSEDHLGGGVAAVAASEGEKGKKAEKDGEEAKKEEAT
SATSTPPVEPSAELADAAGSTGQSEVEVKPEEVASTASTAQEPQPPIDEPASSSITAEPP
ALPPRDPAPVPSSDEADVPAAPPLPPRKDAVDLPKEVEKVPPVGVEQDSTATDAPALPPR
SGTHEDAPRPSAADVREDDGDEADEAGWGLDDAAVVEEDKS