Protein Info for mRNA_5959 in Rhodosporidium toruloides IFO0880

Name: 14327
Annotation: HMMPfam-Domain of unknown function (DUF1793)-PF08760

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 752 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF17168: DUF5127" amino acids 142 to 369 (228 residues), 230.2 bits, see alignment E=4.2e-72 PF16335: DUF4965" amino acids 374 to 551 (178 residues), 233.8 bits, see alignment E=1.6e-73 PF08760: DUF1793" amino acids 557 to 735 (179 residues), 198.4 bits, see alignment E=1.8e-62

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (752 amino acids)

>mRNA_5959 HMMPfam-Domain of unknown function (DUF1793)-PF08760 (Rhodosporidium toruloides IFO0880)
MLPGLLLLYTLLWTHTATARPASQTVFAADASFSPLDDSHHSPSFSPLLPPAIPLAVKSP
YLNALLPTGGDGGSKGYLAGSWARHWPVHYPGSPRDYRLSWAGLIRIDGTTYEFLGAPLS
DSKSSLGPARVARQTAFEYTATKSVFSFEAGNVTFKATFLSPVTPNDLVRQSLPFSYLSI
DVDPDAAQNHFISVYTDISGEWASGDPNANLTWTYTSGSGIGVHAVSRREQLVFSEFAEQ
AEWGEAVLATELRRETVAGSGEVNDLRGTFIKHGRLDGTHDAAYRKMDDRQPVFGFSVQI
TPSRPSAVFTIGHVRQPYVNFVTPEGQVPLAGLWTTRFSRPLDAISYFQYSYPRTSREAA
RFDEQVRRDAQRVSGDNYAALVELSTRQAFATFELTTGVTEDWREDKEGVMAHLKEISSN
GDMSTIDVIFPLHPILLYTNPTLLALLLEPILVYTHSGLYPNRWPVHDLGTYPNATGYND
GNDEPMPVEEAGNMLWMALVYFQLTADKPWVEKHYEVFKSWTTFLTDDGLVPAEQLSTDD
FAGTLSNQTNLAVKAIVGIGAMSELAKGVGRWTDGIHYRAVAEAYVREWTALAMTETGGA
RHAKLAYQDDGSWGTLYNLFGDRLLNLKLFDRQLYADQSSWYAGKAQKYGVPLDSRHVWT
KTDWEVFAAASATDKKGRELFINLLVDYLKAGKVDAAFPDLYETTTANFPGRDGLDWPIY
FISRPVVGGHFALLALEKANGANGVEENPFGG